Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2445 ATGACCACTAACAGCAGGAATAGTTGGCGATTTGGTGCTGTTAAGTTCATAGCACAAGTAATACAAGGTCGATTGTTCATGCTTTGTGCCTCCTTCTTTGTCATGGCAGGAGCGGGCGGCACCTATGTGTTTGGATCATACTCCGAAGCAATCAAATCTTCACAAGGTTATGATCAAAGCACACTCAACCTTTTGGGGTTTGCCAAGGACCTTGGTTCAAATTTTCGCACTCCTGTTGGTCTCATTGGAGAGTTCACGCCTCCATGGTTCAATATCCAAACCCCACACGTTTGGCAGGTTTTCATTTACATGGCCATCGGTTGTTCTTCTGTGAACTTTAACAACACTGGAGTAATAACCACGTCCGTCAAAAACTTCCCAGAAAGTAGGGGCACGATATTGGGTCTGTTGAAGGGCTACCTTGGACTCAGTGGAGCCATCATGACCCAGATTTACTTGGCCATTTATGGGAATGATTCTGAATCTCTCATTCTTCTCATTGCATGGCTCCCTGCTGCTATCTCAGCGGTATTTGCATGTGTGATTCGGATCTTGAAGGTTGGAACCAGCACTAGGCAACCCATTGAGCCAAAAATAATCTACCAGTTTCTTTTTGCATCAATCACACTTGCATTGTTCATCATGTCAATGACCATTGCTCAGAAAGAGATTGCTTTCTCCAAAGCAGCCTATATTGGATGTGCAACTCTGGTATGTTCTGTGCTTATCTTCCCTGTGTTCATTGCTATTAGAGAAGAGTTTTCACTGTGGAAGTGGAACATGAaggaaaaagttgaaaatactGCAAATGAGGTAATCGTAGAGAAACCCCAAATAGTTGAACCTAAAGAGTCACCACCCTCTCCAAGTTCTTCTAGGAATGATCCAAACACGTCTTGTTTTGCCAACATATTCAATAAACCTTAA 927 0.425 MTTNSRNSWRFGAVKFIAQVIQGRLFMLCASFFVMAGAGGTYVFGSYSEAIKSSQGYDQSTLNLLGFAKDLGSNFRTPVGLIGEFTPPWFNIQTPHVWQVFIYMAIGCSSVNFNNTGVITTSVKNFPESRGTILGLLKGYLGLSGAIMTQIYLAIYGNDSESLILLIAWLPAAISAVFACVIRILKVGTSTRQPIEPKIIYQFLFASITLALFIMSMTIAQKEIAFSKAAYIGCATLVCSVLIFPVFIAIREEFSLWKWNMKEKVENTANEVIVEKPQIVEPKESPPSPSSSRNDPNTSCFANIFNKP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2445 308 SUPERFAMILY MFS general substrate transporter 27 185 IPR036259 -
Ssu3g2445 308 MobiDBLite consensus disorder prediction 277 308 - -
Ssu3g2445 308 Gene3D - 50 83 IPR037071 GO:0016021
Ssu3g2445 308 MobiDBLite consensus disorder prediction 285 308 - -
Ssu3g2445 308 Pfam Nodulin-like 26 90 IPR010658 -
Ssu3g2445 308 Pfam Nodulin-like 92 250 IPR010658 -
Ssu3g2445 308 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 10 308 - -
Ssu3g2445 308 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 10 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2445 Ssu-Chr3 76102041 76103035 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2445 14 308 Nodulin-like Gene Family AT2G28120 48.428 9.23e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2445 - - ccaj:109799181 389.037