Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2443 ATGACCGTTAACAACACGAATAGTGGGCGATTTAGTGTTAAGTTTATAGCACAAGTAATAAAAGGCCCACTGTTCATGCTTTGTGCCTCCTTCTTTGTCATGGCAGGAGCGGGCGGCCTCTATGTCTTTGGATCATACAACGAAGCAATCAAATCTTCACAAGGTTATGATCAAAGCACGCTCAACTTTGTGGGGTTTGCCAAGGACCTTGGTGCAAATTTTGGTACACCTATTGGTCTCATTGGAGAGTTTACACCTCCATGGTTGGTACTCCTTCTTGGCTCAGCCTTCAATTTCGTTGGCTATTTCATGATCTGGCTTGCGGTCACTGGCAGAATATCCAAACCCCACGTTTGGCAGGTTTGCATTTACATGGCCATCGGTGCTGGTTCTGTGAACTTTGCCAACACTGGAGTAATAACCACGTGTGTCAAAAACTTCCCAGAAAGTAGGGGCACGATACTGGGTCTGTTGAAGGGTTACGTTGGACTCAGTGGAGCTATCATGACCCAGCTTTACTTGGCCATTTATGGGAATGATTCTGAATCTCTCATCCTTCTCATTGCATGGCTCCCTGCTGCTATCTCAGCGGTATTTGCATGTGTGATTCGGATCATGAAGGTTGGAACTAGCACTAGGCAACCCATTGAGCCAAAAATAATCTACCAGTTTCTTTTTGCATCAATCACACTTGCATTATTTATCATGTCAATGATCATTGCTCAGAAACAGATTGCTTTCTCCAAAGCAGCCTATATTGGATGTGCAGCTCTGGTATGTTTTCTGCTTATCTTCCCTGTGTTCATTGCTAttaggaaagagtttttactGTGGAAGTGGAACATGAaggaaaaagttgaaaatactGCAAATGAGGTAATCATAGAGAAACCCCAAGAAGTTGAACCTAAAGAGTCACCACCCTCTCCAAATTCTTCTAGGAATGATCCAAACACGTCTTGTTTTgccaacatatttaaaaaacctGAAAGAGGAGAGGATCACACCATTCTGCAAGCACTGTTAAGTGTTGACATGTTGTTATTGTTCATTTCATCATTTGCTGGCTATGGAACAAACGTAACAGTGGTGGACAATTTGGGACAAATTAGCAAGTCTCTAGGATACACTGGCAACACAGCGAGAGCATTTGTGTCACTTGTAAGCATTTGGAATTACTTTGGAAGGGTCTTGGCCGGTTTCGTGTCTGAAATTTTGCTTCAGAAGTACAAAGTTCCACGCCCTCTGTTGTTGACCTTTTCGCATTTCGTTACATGCATTGGTCACCTTCTTATTGTGTTCCCAGCACCCGGTTCAGTCTATTTTGCATCAGTGATAATAGGATTTTCCTTTGGTGTAGTAATTCCAATGCTCTATGCACTTGTTTCTGAACTCTTCGGCCTTAAATATTTTGCCACACTGCAGAATTGTGTCTCTATTGTTATTCCCTTTGCATCATATCTGCTAAATGTGATAGTGACTGGCTTCTTTTACGATAGAGAGGCCAAAAATCAGCTCAAAAAAAGTGGCAAAGAATGGGTGAAGGGCACGGAGTTGACTTGCATTGGAACCGAATGCTACAGGCTTCCTTTAACGATAATGGCATGCGTCTCTTTTCTCGCAGGAGTGACTTCTTTGATTTTTGCTATGAGGACCAGACAGTTCTACAAAAGTGACTTGTACAAGAAGTTCACACAGGAAGCCCCAGCTGCTGAAACGGAGTTGACTGCATCCTCGGTTCGTGATGAAGAGGAAGTGATTAATGGTGGTGGTAAACGTTGA 1782 0.4192 MTVNNTNSGRFSVKFIAQVIKGPLFMLCASFFVMAGAGGLYVFGSYNEAIKSSQGYDQSTLNFVGFAKDLGANFGTPIGLIGEFTPPWLVLLLGSAFNFVGYFMIWLAVTGRISKPHVWQVCIYMAIGAGSVNFANTGVITTCVKNFPESRGTILGLLKGYVGLSGAIMTQLYLAIYGNDSESLILLIAWLPAAISAVFACVIRIMKVGTSTRQPIEPKIIYQFLFASITLALFIMSMIIAQKQIAFSKAAYIGCAALVCFLLIFPVFIAIRKEFLLWKWNMKEKVENTANEVIIEKPQEVEPKESPPSPNSSRNDPNTSCFANIFKKPERGEDHTILQALLSVDMLLLFISSFAGYGTNVTVVDNLGQISKSLGYTGNTARAFVSLVSIWNYFGRVLAGFVSEILLQKYKVPRPLLLTFSHFVTCIGHLLIVFPAPGSVYFASVIIGFSFGVVIPMLYALVSELFGLKYFATLQNCVSIVIPFASYLLNVIVTGFFYDREAKNQLKKSGKEWVKGTELTCIGTECYRLPLTIMACVSFLAGVTSLIFAMRTRQFYKSDLYKKFTQEAPAAETELTASSVRDEEEVINGGGKR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2443 593 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 9 572 - -
Ssu3g2443 593 CDD MFS_Mch1p_like 22 541 - -
Ssu3g2443 593 MobiDBLite consensus disorder prediction 297 318 - -
Ssu3g2443 593 SUPERFAMILY MFS general substrate transporter 13 205 IPR036259 -
Ssu3g2443 593 Gene3D MFS general substrate transporter like domains 342 557 IPR036259 -
Ssu3g2443 593 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 572 - -
Ssu3g2443 593 Pfam Nodulin-like 25 271 IPR010658 -
Ssu3g2443 593 Gene3D - 49 82 IPR037071 GO:0016021
Ssu3g2443 593 SUPERFAMILY MFS general substrate transporter 226 554 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2443 Ssu-Chr3 76088124 76089905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2443 12 586 Nodulin-like Gene Family AT2G28120 56.076 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2443 - - gmx:100799928 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2443 3 76088124 76089905 Ssu3g2443 3 76088124 76089905 ECH