Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2442 ATGGCAGGAGGTGGCGTCGTCTATGTGTTTGGATCATACTCAGAAGCAATCAAATCTTCACAAGGTTATGATCAAAGCACGCTCAACTTTTTAGGGTTTTGCAAGGACCTTGGTGGAAATTTGGGTGCTCCTGTTGGTCTCCTTGGAGAGGTTACCCCTCCATGGTTGAACTTTGTCAACACTGGAGTAATAAACACGTGTGTCAAAAACTTCCCAGAAAGTAGGGGCACGATATTGGGTTTGCTGAAGGGTTACGTTGGACTCAGTGGAGCTATCATGACCCAGCTTTACTTGGCCATTTATGGGAATGATTCTGAATCTCTCATCCTTCTCATTGCATGGCTACCTGCTGCTATACCAGCGGCATTTGCATGTGTAATTCGGATCATGAAGGTTGGAACTTGGCAACCCAACGAGCCAAAAATAATCAAGCAGTTTCTTTTTGCATCAATTGCACTACTTGTATTATTCATCATGGTTATGATCATTGCTCATAAACAGATCATTGCTTTCTCCAAAGTGGCCTACATTGGAAGTGCGACTGTGGTATGTGGTCTTCTCATCCTCCCTTTGTTCTTTGCTATTAGAAAGGAGTTCTTACGGTGGAACATCAAGGAAAAACTTGCACATACTGCAAATGAGGTAATCGTAGAGAAACCACAAATAGTTGAACCTAAAGAGTCACCACCCTCTCCAAATTCTTCTAGGAATGATCCAAACACGTCTTGTTTTGCCAACATATTCAATAAACCTGAAAGAGGAGAGGATCACACCATTCTGCAAGCACTGATAAGTGTTGACATGTTATTGTTGATTTCATCATTTGCTGGCTATGGAACAAACGTAACAGTAGTGGACAATTTGGGACAAATTGGCAAGTCTCTAGGATACACTGGCAACACAGTGAGATCCTTTGTGTCACTTGTAAGCATTGGGAATTACTTTGGGAGGGTCTTGGCTGGTTTTGTGTCTGAAATTTTGCTTCAGAGGTACAAAGTTCCCCGGTCAAGAAGTTCAGAGACAATGCAATAG 1032 0.4244 MAGGGVVYVFGSYSEAIKSSQGYDQSTLNFLGFCKDLGGNLGAPVGLLGEVTPPWLNFVNTGVINTCVKNFPESRGTILGLLKGYVGLSGAIMTQLYLAIYGNDSESLILLIAWLPAAIPAAFACVIRIMKVGTWQPNEPKIIKQFLFASIALLVLFIMVMIIAHKQIIAFSKVAYIGSATVVCGLLILPLFFAIRKEFLRWNIKEKLAHTANEVIVEKPQIVEPKESPPSPNSSRNDPNTSCFANIFNKPERGEDHTILQALISVDMLLLISSFAGYGTNVTVVDNLGQIGKSLGYTGNTVRSFVSLVSIGNYFGRVLAGFVSEILLQRYKVPRSRSSETMQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2442 343 Pfam Nodulin-like 2 56 IPR010658 -
Ssu3g2442 343 Pfam Nodulin-like 57 193 IPR010658 -
Ssu3g2442 343 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 57 336 - -
Ssu3g2442 343 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 56 - -
Ssu3g2442 343 Gene3D - 16 51 IPR037071 GO:0016021
Ssu3g2442 343 SUPERFAMILY MFS general substrate transporter 174 327 IPR036259 -
Ssu3g2442 343 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 57 336 - -
Ssu3g2442 343 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2442 Ssu-Chr3 76060898 76062053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2442 1 335 Nodulin-like Gene Family AT2G28120 50.526 1.21e-117 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2442 - - gmx:100799928 466.848