Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2438 ATGCTAACGCAGTTCATGCTCGCATTGCATTTCCGACCGTGCTTCCCTCCTCACTTCTCTCGCTCCATTACCATTAGGGtttcctctctcttctctttccctCCCTCTCCCGTTCTCTCCTCCGCATCTCTCCGCGCCATGTCGAAGCCACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCCCGCGCCGCCGCCACCAAGAAGAAGTCCCAATCCCAACAATCCCAACCGCCGCAACCTTCCCCGTCCCCCAAGAAAAGAAAGTCCCCGCACTCCACTTCCTCGCAAAACCCTAACAACAACCTCAAACCCTCCGAATCCCCTTCCCCGGCCAAAACCGCTCCACCGCCGCCCGACAAGCCACAGGAGACCGCCCAGCCGGAGCCGCAGGAGACCGCCCAGCCGGAGCCGCCGAGCAAGGTCCGCCACGCGTCATCTTCTTCCTCCCAGGAGAAGACCGCGGAGCTGAAGAAGCTCGTCGCGCAGCTGAAGAAGAAACCCTCGGATTTCGATCCCGCCTCCGCGGCCTCCTGGGAGAAGGGCCAACCCGTGCCGTTCCTCTTCCTCTGCCTGGCCTTCAACATGATCTCCCAGGAAACCGGAAGAATCGTCATCACGGACATTGTCTGCAACCTGCTCAGGACCGTGATGCACGTCACGCCGGAGGACCTCGTTCCTGTCGTGTACCTCTCCGCGAACCGGATCGCTCCGGCCCACGAAGGGCTGGAATTGGGACTCGGCGACGCCTCCATCACCAAGGCGCTTGCTGACGCCTATGGAAGGACCGAAGCGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCCAAAGAGAGCCGTTCGTCTCAGCCTATGATGTGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAGTCTGGAAAAGACagtcaagagaagaaaaagaaccataTTAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTAcagACAAAGTTGCGAATTGGCTATGCTGAGCAAACTCTCTTAGCTGCATTTGGCCAAGCTGCAGTATACACTGAAGAACACTCTCAACCGCCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTTCAAAGATTGTTAAACAAGTTTATTCTGTTCTTCCTGATTATGACAAAATAGTATCTGCTCTGCTTACGGAGGGTCTATGGATGCTCCCAAAGACATGTAATTTTACTCCTGGTGTTCCAATTGGACCTATGCTGTCAAAGGCAACAAAGGGTGTGTCtgaaattctaaataaattccAGGATGTGGAGTTTACCTGTGAATACAAATACGATGGAGAGCGTGCCCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAATGCAGAACGGAACACTGAAAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAACCAACTGTATCATCATTTGTTCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAGCAGAAGATCCAACCTTTCCAGGTGCTTAGTACTCGGGCTCGCAAGAATGTAGGAATAAGTGATATAAAGGTTAATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTCCGTCGAGAGCATCTCTATGTCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACATCAATAACATCAAATGATGTGGAGGAAATACAGAAATTTCTCAACAAAGCTGTTGATGCAAGTTGTGAgggattaattattaaaacattaaatgagGATGCTTCTTATGAACCTTCCAAGCGTTCGCTCAACTGGCTAAAACTGAAGAAAGATTATATGGAAACTATAGGGGACTCTCTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACAGGATTCACGGAAGAAGTGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATAGATATGCAGAAACAATCAATCCTGATGTCTGGCTTGAAGCCAGTGAGGTATGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGTGCTGCAGTGGGCATAGTAGATCCGGACAAGGGCATATCTCTTCGATTTCCACGATTACTTCGAATCCGGCCTGACAAAACTCCTGAACAGGCCTCATCATCTGAGCAGGTTGCTGATATGTATAATGCTCAAAAACACAATCACACGATAACGAACAACCAAGATGACAATGAAGATGATGATTGA 2409 0.4666 MLTQFMLALHFRPCFPPHFSRSITIRVSSLFSFPPSPVLSSASLRAMSKPPSAFDALMSGARAAATKKKSQSQQSQPPQPSPSPKKRKSPHSTSSQNPNNNLKPSESPSPAKTAPPPPDKPQETAQPEPQETAQPEPPSKVRHASSSSSQEKTAELKKLVAQLKKKPSDFDPASAASWEKGQPVPFLFLCLAFNMISQETGRIVITDIVCNLLRTVMHVTPEDLVPVVYLSANRIAPAHEGLELGLGDASITKALADAYGRTEAWIKTQYQKKGDLGLVAKESRSSQPMMWKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAAFGQAAVYTEEHSQPPPEIQSPLEEASKIVKQVYSVLPDYDKIVSALLTEGLWMLPKTCNFTPGVPIGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTEKFPDVVAAVSRLKKPTVSSFVLDCELVAYDRAKQKIQPFQVLSTRARKNVGISDIKVNVCIFAFDLLYLNGQALLQENLRVRREHLYVSFEEESGFLQFATSITSNDVEEIQKFLNKAVDASCEGLIIKTLNEDASYEPSKRSLNWLKLKKDYMETIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFTEEVLEERSSSLRSKVIPKPKAYYRYAETINPDVWLEASEVWEVKAADLTISPVYRAAVGIVDPDKGISLRFPRLLRIRPDKTPEQASSSEQVADMYNAQKHNHTITNNQDDNEDDD 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2438 802 Pfam ATP dependent DNA ligase domain 427 631 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ssu3g2438 802 PANTHER DNA LIGASE 1 67 800 - -
Ssu3g2438 802 CDD OBF_DNA_ligase_I 639 784 - -
Ssu3g2438 802 MobiDBLite consensus disorder prediction 60 155 - -
Ssu3g2438 802 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 243 782 IPR000977 GO:0003910|GO:0005524|GO:0071897
Ssu3g2438 802 MobiDBLite consensus disorder prediction 86 108 - -
Ssu3g2438 802 CDD Adenylation_DNA_ligase_I_Euk 416 634 - -
Ssu3g2438 802 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 451 459 IPR016059 GO:0003909
Ssu3g2438 802 Gene3D - 160 429 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu3g2438 802 ProSitePatterns ATP-dependent DNA ligase signature 2. 605 631 IPR016059 GO:0003909
Ssu3g2438 802 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 67 800 - -
Ssu3g2438 802 MobiDBLite consensus disorder prediction 109 124 - -
Ssu3g2438 802 MobiDBLite consensus disorder prediction 139 155 - -
Ssu3g2438 802 Gene3D DNA ligase/mRNA capping enzyme 456 581 - -
Ssu3g2438 802 SUPERFAMILY Nucleic acid-binding proteins 639 785 IPR012340 -
Ssu3g2438 802 ProSiteProfiles ATP-dependent DNA ligase family profile. 533 669 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ssu3g2438 802 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 167 417 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu3g2438 802 Gene3D - 636 798 IPR012340 -
Ssu3g2438 802 MobiDBLite consensus disorder prediction 768 791 - -
Ssu3g2438 802 Pfam DNA ligase N terminus 185 360 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu3g2438 802 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 419 637 - -
Ssu3g2438 802 Gene3D - 437 635 - -
Ssu3g2438 802 MobiDBLite consensus disorder prediction 766 802 - -
Ssu3g2438 802 Pfam ATP dependent DNA ligase C terminal region 656 767 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2438 Ssu-Chr3 75993959 76000986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2438 6 801 Core DNA Replication Machinery Family AT1G08130 64.259 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2438 K10747 - gmx:100783155 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2438 3 75993959 76000986 Ssu3g2438 3 75993959 76000986 ECH