Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2435 ATGGAAACCACGGCAGAGGTTGTTTCATCTCATTGTCTTGTTGTATCAGAGTTCTCTGAATCCAGCCCCACGCAACTTTCTTCTATGGAACTTGGGATTCAGAATTTTGGCTGCGCGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGTTGTGATGAGGTATTTGACTGTAGGCATTGCCATAATGAAGCTAAGAACTCCGAGGAGGTTGATGCAGTGGATCGTCATGATATTCCGCGCCGTGAAATTAAGAAGgTTATCTGCTCCTTATGTGATACAGAGCAAGATGCTCAACAGTACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTGCTGTATGCAAATTCTTTGATGATGATATTTCAAAGAACCAATACCACTGTGACGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCATTGCAAGAGATGTGgatGTTGCTACTCCAAGGTAATGGAAAAGGGGCATCGTTGTGTAGAAAGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACAGTGAGAAATACCACTGTCTTACCTTGCGGGCATACTATACATTTAGATTGTGTTAAAGAGATGGAACAACATCATAGGTACTCATGTCCTGTTTGCTCAAAATCCATATGTGACATGTCAAGTATGTGGAAGAAGCTAGACGAAGTGATTGCCTCAACTCCAATGCCTGAAACGTACAAAAGTAAGATGGTGTGGATACTTTGCAATGATTGTGGAGTAAACTCTCATAGTACAATTCCATATTGTGGCCCATAA 807 0.4164 METTAEVVSSHCLVVSEFSESSPTQLSSMELGIQNFGCAHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEVDAVDRHDIPRREIKKVICSLCDTEQDAQQYCINCGVCMGKYFCAVCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMEKGHRCVERAMHHNCPVCFEYLFDTVRNTTVLPCGHTIHLDCVKEMEQHHRYSCPVCSKSICDMSSMWKKLDEVIASTPMPETYKSKMVWILCNDCGVNSHSTIPYCGP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2435 268 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Ssu3g2435 268 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
Ssu3g2435 268 SMART ring_2 174 216 IPR001841 -
Ssu3g2435 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 247 IPR013083 -
Ssu3g2435 268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 260 - -
Ssu3g2435 268 Pfam Zinc-ribbon 221 261 IPR039512 -
Ssu3g2435 268 SUPERFAMILY CHY zinc finger-like 35 109 IPR037274 GO:0008270
Ssu3g2435 268 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Ssu3g2435 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 23 260 - -
Ssu3g2435 268 SUPERFAMILY RING/U-box 172 222 - -
Ssu3g2435 268 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Ssu3g2435 268 Pfam RING-type zinc-finger 174 214 IPR027370 -
Ssu3g2435 268 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2435 Ssu-Chr3 75956126 75959156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2435 34 255 C2H2 Transcription Factor Family AT3G18290 39.474 1.51e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2435 K10144 - gmx:100812709 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2435 3 75956126 75959156 Ssu3g2435 3 75956126 75959156 ECH