Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2434 ATGGACTCAACGGATTTTCATCAAGAGACTCTTGTGCACATTAAAGAGTTTGAGCTGCACGACTTTGTCGAAGATCCTTATAACTTAGATCATCAGTtcatcaatttgatttgttgGGAGAATAAAGATGCTATCTGTAACTTCAATTCTGAGCCTATCAATGAATGCTTCATTGATAACTCATTCCTCTCATACCCTGCAATCCCCTCTGATCAGTGCAATATTGATTCTGTGAATGTTCATGATCCAAGCTCTACTGTTAGCTCCTTCTCTTGTTTTGATGGGGAAGCCAAAGGAGGAGGAGAGGAAGAAAATGAGATAAGGGATTCTTCTGCAACAACAACCACCACAACGGCCACTAAGAGTGCTAATACTGAGCCAAGACCAAAAACTGATAGGTCCAAAACTTTGGTTTCTGAGAGGAGGAGAAGAGACCGAATGAAGGAGAAGCTTTATACATTGCGGTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCAGTTTCATATGTGCATGAGCTTCAAGCACAAGCCAAGATGCTGAAGGCTGAGGTTGAAGGACTTGAAACATCCTTATTGGTGTCCAAAAATTATCAAGGATCAATTGAAAACCCCGTGAAGGTTCAATTCACCAACAACAGCCGTTCAATCTGCAAGAAGATAATCCAGGCGAAAGGCTCTGAGCCAGAAATTAACCTGGCCAACTTAAAGCTATGGGTGACTGAAGCTTTTGTGAACCAAGGCTTTGAATTCATACCTTTTCTTATGCTTGACTCTTTCAATCTATAA 807 0.404 MDSTDFHQETLVHIKEFELHDFVEDPYNLDHQFINLICWENKDAICNFNSEPINECFIDNSFLSYPAIPSDQCNIDSVNVHDPSSTVSSFSCFDGEAKGGGEEENEIRDSSATTTTTTATKSANTEPRPKTDRSKTLVSERRRRDRMKEKLYTLRSLVPNITKMDKASIIGDAVSYVHELQAQAKMLKAEVEGLETSLLVSKNYQGSIENPVKVQFTNNSRSICKKIIQAKGSEPEINLANLKLWVTEAFVNQGFEFIPFLMLDSFNL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2434 268 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 230 - -
Ssu3g2434 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 205 IPR036638 GO:0046983
Ssu3g2434 268 MobiDBLite consensus disorder prediction 126 143 - -
Ssu3g2434 268 MobiDBLite consensus disorder prediction 110 125 - -
Ssu3g2434 268 Gene3D - 122 197 IPR036638 GO:0046983
Ssu3g2434 268 MobiDBLite consensus disorder prediction 92 143 - -
Ssu3g2434 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Ssu3g2434 268 Pfam Helix-loop-helix DNA-binding domain 139 181 IPR011598 GO:0046983
Ssu3g2434 268 SMART finulus 137 186 IPR011598 GO:0046983
Ssu3g2434 268 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 230 - -
Ssu3g2434 268 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2434 Ssu-Chr3 75938403 75939738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2434 11 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 46.809 1.57e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g2434 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2434 - - var:108339427 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2434 3 75938403 75939738 Ssu3g2434 3 75938403 75939738 ECH
Ssu8g0619 8 10139834 10141094 Ssu3g2434 3 75938403 75939738 PCT