Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2432 ATGGAGATGGAGGGGTTGGATTCTAATAATTCTACCCACAACATAGCCAAGGGCAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTGCGGtgtcgctgccaccaccaccaccactaccaccgtGATGATCACGTCTAGCTGCTCGAGCGCTAACTCCGGCGACTCGTCCACCACCACTTACGAGAGCGAAGAGGAAGCCATGGCGAATTGCTTGATTCTCTTGGCCCAGGGTGGGGaatctcatcctcatcatcacAAGCAACATGTTGAAGACCATGGTCTTGATAATTGTGACGGTAACAAGACAGAAAAGGGTATCACTACCACCGCAACAACAGCCGTTAATACCACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCGCTGGGTGGACACAGGGCGAGTCACAAGAAGCCAAAACTCGCGGCTGAAGAGAAAAAACCACCACCGTCTCAGTTGACACACATGATTATTAGCAACTATGGTCGGTTTGAGGAGGCTAATTATGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTCATGGCAACAACAAGAAGGGTAAGATTCACGAGTGTTCAATTTGTGGCTCTGAATTCACATCGGGGCAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACGCCAACACTGCTGACACAACAAGCTGTACCACCGTCACCCCTCGGCCGAGGAATATCTTGCAATTGGATCTTAACCTCCCGGCGCCGGAAGACGACGTCCGGGAGGCTAAGTTCCAATTTGCGGCAACCCAGGTGCTGGTTGGTACCCCGGCTTTGGTGGACTGTCATTATTAA 861 0.4681 MEMEGLDSNNSTHNIAKGKRTKRMRLLSPCGVAATTTTTTTVMITSSCSSANSGDSSTTTYESEEEAMANCLILLAQGGESHPHHHKQHVEDHGLDNCDGNKTEKGITTTATTAVNTTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLAAEEKKPPPSQLTHMIISNYGRFEEANYVKSGPPISLQLGHGNNKKGKIHECSICGSEFTSGQALGGHMRRHRASTNANTADTTSCTTVTPRPRNILQLDLNLPAPEDDVREAKFQFAATQVLVGTPALVDCHY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2432 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 229 IPR013087 -
Ssu3g2432 286 MobiDBLite consensus disorder prediction 1 15 - -
Ssu3g2432 286 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 286 - -
Ssu3g2432 286 SMART c2h2final6 125 147 IPR013087 -
Ssu3g2432 286 SMART c2h2final6 202 224 IPR013087 -
Ssu3g2432 286 MobiDBLite consensus disorder prediction 141 163 - -
Ssu3g2432 286 Gene3D Classic Zinc Finger 122 224 - -
Ssu3g2432 286 SUPERFAMILY beta-beta-alpha zinc fingers 124 224 IPR036236 -
Ssu3g2432 286 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Ssu3g2432 286 Pfam C2H2-type zinc finger 202 226 - -
Ssu3g2432 286 Pfam C2H2-type zinc finger 125 150 - -
Ssu3g2432 286 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Ssu3g2432 286 PANTHER ZINC FINGER PROTEIN ZAT5 1 286 - -
Ssu3g2432 286 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2432 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2432 Ssu-Chr3 75898278 75899138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2432 3 286 C2H2 Transcription Factor Family AT2G28200 43.689 5.54e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2432 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2432 - - gmx:100785286 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0622 8 10175428 10176321 Ssu3g2432 3 75898278 75899138 PCT