Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2430 ATGATGCCAAAGGCCACATCTACCTCCTCAAATGATTTTCAAGAACTGCAGATGTTCCCTGTGACCGAATATTTGGCTTCACCCTCTGTCGAAGCAACCTCTTCCTCAGCTTCACACTCCTCTaactctcttctcttctatctCTCACTTCTCAAGGACAAGCTGAATCAACTGCAGAACCTAGTAGGTGTTGTTGTGTCTCCTGAACAGAACCTACCCGAGTCAACCCCCATGGCCATATCCACCATGAACACCACAATCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGCCAACAAATGACTCTTGGTTCCTCTCCAGGTACTACTAACGAATTACACAAACATCAGCACCAGTACCAACACCAACACCAGAACCAACAACAAATTGATCATGATAGATTATTACCACCACATCATCAATCAAACTTTGTCAACAACAATAGGGGTGTGCTTAGTAACATTAACATAGGCTCAGGTTTAATTAGAGGGCAAAGtttcttatctaatattgaGAGAGAGGCACTGGATTGGTTTGCTGAAAGCTATAATAATAGCAATGGTGGTAATTGTAACAAGGATGATGAAGCCAACATTGACATCATGGGAGAGAGTGATATAATTGAATTGGATGTTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGATGCTAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACCAGTGCAGCCTTGAGCAACCCAATTAAAAACAAGGAGGGTTTATTGGGTGAGGGAAGTGCCACCAAGAAATATTCGTGCCCTCATGAAGGGTGTAGGTGGAACCAAAAGCATGCCAAGTTCCAGCCCTTGAAGTCAATGGTTTGTGTGAAAAACCACTACAAGAGAAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAACAGTTTTCGGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCGTGTGGCACTACGTTTTCTAGGAAAGACAAGCTTATGGGCCATGTTGCTTTGTTCGTGGGGCACACTCCAGCTATTAATGGCTTGTCATCATACTCGGGAAAATCAGAACAAGCATTGCAACAACATAATATTACTGGTGGTTCAAGATGA 1185 0.4312 MMPKATSTSSNDFQELQMFPVTEYLASPSVEATSSSASHSSNSLLFYLSLLKDKLNQLQNLVGVVVSPEQNLPESTPMAISTMNTTIQEIIVAATSMRFTCQQMTLGSSPGTTNELHKHQHQYQHQHQNQQQIDHDRLLPPHHQSNFVNNNRGVLSNINIGSGLIRGQSFLSNIEREALDWFAESYNNSNGGNCNKDDEANIDIMGESDIIELDVADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALSNPIKNKEGLLGEGSATKKYSCPHEGCRWNQKHAKFQPLKSMVCVKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPAINGLSSYSGKSEQALQQHNITGGSR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2430 394 MobiDBLite consensus disorder prediction 108 130 - -
Ssu3g2430 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Ssu3g2430 394 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 11 382 IPR044300 GO:0010044|GO:0010447
Ssu3g2430 394 SMART c2h2final6 276 309 IPR013087 -
Ssu3g2430 394 SMART c2h2final6 224 246 IPR013087 -
Ssu3g2430 394 SMART c2h2final6 314 336 IPR013087 -
Ssu3g2430 394 PANTHER OS08G0562300 PROTEIN 11 382 - -
Ssu3g2430 394 Gene3D Classic Zinc Finger 220 248 - -
Ssu3g2430 394 Gene3D Classic Zinc Finger 312 362 - -
Ssu3g2430 394 SUPERFAMILY beta-beta-alpha zinc fingers 222 249 IPR036236 -
Ssu3g2430 394 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2430 Ssu-Chr3 75877439 75878623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2430 6 369 C2H2 Transcription Factor Family AT5G22890 48.378 4.31e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2430 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2430 - - var:108339426 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0623 8 10188175 10189410 Ssu3g2430 3 75877439 75878623 PCT