Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2427 ATGGGTCAGATCCAGTATTCCGAGAAGTACTTCGATGATACTTATGAATATAGGCATGTGGTTCTGCCTCCTGAAGTCGCCAAAATGCTTCCCAAGAATCGCCTTCTCTGCGAAAATGAGTGGCGGGCAATTGGGGTTCAGCAGAGTCGTGGTTGGGTTCACTATGCAATTCATCGCCCTGAGCCACACATAATGCTTTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAAAACCAGGCCCAGCAAAGCATGCTTGTCAAATGA 267 0.4794 MGQIQYSEKYFDDTYEYRHVVLPPEVAKMLPKNRLLCENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQSMLVK 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2427 88 SMART CKS_2 3 72 IPR000789 GO:0016538
Ssu3g2427 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Ssu3g2427 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Ssu3g2427 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Ssu3g2427 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Ssu3g2427 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Ssu3g2427 88 Gene3D - 1 84 IPR036858 GO:0016538
Ssu3g2427 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 85 - -
Ssu3g2427 88 SUPERFAMILY Cell cycle regulatory proteins 1 82 IPR036858 GO:0016538
Ssu3g2427 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Ssu3g2427 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2427 Ssu-Chr3 75837458 75838421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2427 1 82 Core Cell Cycle Gene Families AT2G27970 89.024 7.18e-52 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2427 K02219 - gmx:100786340 179.489