Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2426 ATGCATGCATGGTGCCAAAGGACTGTCAACCTAGCCCCACTCAAACAACTGAGACTAGCAATAGCTGTGTTTCAGTTACAGTTCAGTCCAGATCCCCAGGAACCAGTTGGGCTTCCAAAGTCAtcaaacaatggaatgaaaCACAGCACATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAggATCTACGCTTGCATAAGTTGGTCTTCGAGGAAGATGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGTGGAAAGCAACTATTGGTTGGTTACAAAAAGGGATTTGGAATTGTTTGTAGCTGCTGTGAGTGTGAGgTTAGCCCTTCTCAGTTTGAAGCACATGCTGGTTGGGCATCACGACGGAAGCCTTACCTGCACATATACACATCTAACGGAGTCTCACTCCATGAGTTATCTATCTCCTTATCGAAAGACCGTAGGTTTTCTACCAATGATAATGATGACCTGTGCAGTATATGTCGAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTACCTCTTCCATGTATTCCAAATGGTACCTGGTATTGTAAATATTGTCAGAATGTGTTCCAGAAGGACAAATATGTTGAGCGTAATGAAAATGCTAAGGCAGCTGGAAGGATTGATGGCATTGATCCTTTAGAACAGATAAACCAGAGATGCATTCGTATTGTCAAAGAGTTTGACCTTGGTGGATGTGCACTGTGTAGAGGCCAAGATTTCAGCAAAAGCTTTGGTCCCCGGACAGTAATTATTTGTGATCAGTGCGAAAAGGAATATCATGTTGGGTGTTTGAGGGATCATAATATGCAGAACCTAGAGGAATTACCTGAAGGGAAATGGTTCTGCTGTTCAGATTGTGATCAACTTCATACTGCTCTGGTGAATTTGGTGGCTCGTGGGAAAGAGAATCTTCCAGATTCCCTCCTAAGTTTGATTAGAAAGAAATATGCTGACAAGGGTTTAGAAACTGGGGCTGATCTTGATATAAAATGGAGGGTTCTGAACTGGAAACTGGCTGAATCTGATGAGACTAGGCAATTGCTTTCAAAAGCTGTTGCTATTTTCCATGAGCGATTTGATCCAATAGTTCATCCTACTTCTGGCATTGATTTCATTCCAACAATGCTTTATGGAAGGGACATTAAGGGTCAAGATTTTGGCGGAATGTACTGTGCGGTGCTCACTGTCAATCAAGTGATTGTATCTGCTGGAATATTCCGTGTGTTTGGGTCAGAAGTGGCGGAGTTTCCGTTGGTGGCAACTGTTACCTGA 1317 0.4252 MHAWCQRTVNLAPLKQLRLAIAVFQLQFSPDPQEPVGLPKSSNNGMKHSTSRGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYARGKQLLVGYKKGFGIVCSCCECEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSTNDNDDLCSICRDGGDLLCCDGCPRAFHIDCVPLPCIPNGTWYCKYCQNVFQKDKYVERNENAKAAGRIDGIDPLEQINQRCIRIVKEFDLGGCALCRGQDFSKSFGPRTVIICDQCEKEYHVGCLRDHNMQNLEELPEGKWFCCSDCDQLHTALVNLVARGKENLPDSLLSLIRKKYADKGLETGADLDIKWRVLNWKLAESDETRQLLSKAVAIFHERFDPIVHPTSGIDFIPTMLYGRDIKGQDFGGMYCAVLTVNQVIVSAGIFRVFGSEVAEFPLVATVT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2426 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 304 IPR013083 -
Ssu3g2426 438 PANTHER AUTOIMMUNE REGULATOR 29 436 - -
Ssu3g2426 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 230 IPR013083 -
Ssu3g2426 438 CDD PHD1_AIRE 160 200 - -
Ssu3g2426 438 ProSitePatterns Zinc finger PHD-type signature. 161 200 IPR019786 -
Ssu3g2426 438 Pfam Tify domain binding domain 94 142 IPR032308 -
Ssu3g2426 438 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 29 436 - -
Ssu3g2426 438 MobiDBLite consensus disorder prediction 36 53 - -
Ssu3g2426 438 SMART PHD_3 246 302 IPR001965 -
Ssu3g2426 438 SMART PHD_3 160 201 IPR001965 -
Ssu3g2426 438 SUPERFAMILY FYVE/PHD zinc finger 147 202 IPR011011 -
Ssu3g2426 438 MobiDBLite consensus disorder prediction 34 58 - -
Ssu3g2426 438 SUPERFAMILY FYVE/PHD zinc finger 246 299 IPR011011 -
Ssu3g2426 438 Pfam PHD-finger 161 202 IPR019787 -
Ssu3g2426 438 ProSiteProfiles Zinc finger PHD-type profile. 158 203 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2426 Ssu-Chr3 75828130 75831567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2426 58 436 PHD Transcription Factor Family AT2G36720 59.162 5.01e-164 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu3g2426 TDBD 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2426 - - lang:109351691 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2426 3 75828130 75831567 Ssu3g2426 3 75828130 75831567 ECH
Ssu8g0626 8 10215202 10222636 Ssu3g2426 3 75828130 75831567 PCT