Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2422 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTTCTTTCCTGAGGGACTCCCATTCCCAGTCATCTGGGAGGGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCGCTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGACCTGGTGAGGTACCTCTTGGACAAAGGAGAGATGGGTTGGTTGCGGACCTTTCACGGGAAGATAGACTAGATATCCAAGAGAGAGGGCAGGGGCTTGTTTTAGAAGATGCAGTTTTAGGTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCGTGACGATCCTGAGGATTTGAACAATTCTAGCTGGGAGAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCATGTATCAAACATTTCTGGAAGAAGTAATGGTTCAAGGGGACAATGGCTTGGAGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAACTGAGTAGCCAGCAGAGAAGTGTTTCTTCTGGGGAAAACAGGGAAGAACCAGCTGCTGAAATTGATACACAAATTGAACGTGTGCGTGATGGACTCATTGCTAACCAGATTGGGGGCCAAACTGAGCATACACGGAGGGGCATACGCAAATTATGTGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAGAGAGAAAGGCAAAGTGAAATTCAGGAGTTGTTGGACCATCGGGCTGTATCGCAATTCCCATACCGTAATCGCATTCAGGCACTGCTTAGAGGCAGATTCTTGAGAAATGATAGATCTGTTGAAAATAACAGGTCCCTTTCCGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGAAGACAAACTGTATCAGGTCTAAGGGAAGGAATTTTCTCTAGAAAGGAGAATAGTGGTTGCAGTCAAGCAACGAGCAATGTATCTGATACCTCATCTAATGttgatattgattttaataCAAATGAACAAATGAGATCAAGCAGTTCACATATGGTCCCAAGTGTACATTCTGAACAGTTTGACCCTAATGACAAAGGAAGCAATGGCCTTAGGGTATCAGGCAGCCAGAACTGTTTACAAGGAACCACATGTGAGCATTTAAATGGGCAAGACTCTACTGCTCAAGTAGGAGATCAGTTGCAGCATTTGCCAATTGAATCAAAAGATTGGCAATCATCATTCAGTGCTGGTGTTGAAAGAGGGGACAACACTGAGCAAAGTGTTGATGTGATGCCAACTGAAGATACTGCTAATGAACTTGCCCAACAGAGCTTGCAAATTGAAGATTCAGAGCATAGTAATAATCAGGAATTCAGGGAGGTTCATAATGAGCAGTCTGAGCTGGGTGATATAAATAATAGTGAAAACAATTATTCAAATCACAACAATCATATGGAGGGTAATGTTGTTGATGTAAATTGGAATGAATCTGGTGCTCTAGAAGGAGAACAGCCAGAAgaagattttgaaaatgaagggAGTGAGTGGTATCAGAGTAATACTGAATGGAGAAATAGCACTGAGGAAAATGTGGATGATAATCAGCTCAGTAATACAGCAAATGAGTGGCCTGAAAACGGTTTGGGAAATGAGGACGGAGAAAACTCTCGTCTACAAGAATCTCATGAAGTATGGCAAGAAGATGGTAGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCTGATCATGAAAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGAAGAAGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAACCTCCTTCGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTAATGCTCACACTGACTGGGAGCTGCAAGAGACAACCCCTTCTTCTGCCTCAGTAGAGCAGGACCTTGAGCAGCAGAGTAGGGATCAAATTGTTGGTCAGGAGGGTACAGTTAATAGTCCGCTTGACCTGCCCTCTTTACCTATACCGCCGCCTCTGCCTCTTTGGGACCAGCACCCCCATCGTGACAACTGGTCACAAAATGACATACATAATCAGCGTCTAGGAATTGATTGGGAGATAATTAATGACTTGAGAATTGACATGGCTCGGTTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAACTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGGTTCAACAGGAATACATGACTGTGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTACTCCAAAGCAGAAGGAAGTGCCCAATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTATTCTATACTAtaa 2580 0.4345 MAIAGLHSVSVLDSSFLRDSHSQSSGRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGEVPLGQRRDGLVADLSREDRLDIQERGQGLVLEDAVLGENESETWSQSQSQNESRDDPEDLNNSSWENSSDLGEVERERVRQIFREWMNSGARDHVSNISGRSNGSRGQWLGETEQERVRIIREWVQLSSQQRSVSSGENREEPAAEIDTQIERVRDGLIANQIGGQTEHTRRGIRKLCGRQAMLDMLKKAERERQSEIQELLDHRAVSQFPYRNRIQALLRGRFLRNDRSVENNRSLSVAESELGFLRRRQTVSGLREGIFSRKENSGCSQATSNVSDTSSNVDIDFNTNEQMRSSSSHMVPSVHSEQFDPNDKGSNGLRVSGSQNCLQGTTCEHLNGQDSTAQVGDQLQHLPIESKDWQSSFSAGVERGDNTEQSVDVMPTEDTANELAQQSLQIEDSEHSNNQEFREVHNEQSELGDINNSENNYSNHNNHMEGNVVDVNWNESGALEGEQPEEDFENEGSEWYQSNTEWRNSTEENVDDNQLSNTANEWPENGLGNEDGENSRLQESHEVWQEDGSFQEAVENWLGGPSDHESAPVGRIRGFYFPEEDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGNAHTDWELQETTPSSASVEQDLEQQSRDQIVGQEGTVNSPLDLPSLPIPPPLPLWDQHPHRDNWSQNDIHNQRLGIDWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSTGIHDCESPEDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVVEVIRAYSIL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2422 859 MobiDBLite consensus disorder prediction 526 557 - -
Ssu3g2422 859 Coils Coil 735 762 - -
Ssu3g2422 859 SUPERFAMILY RING/U-box 806 852 - -
Ssu3g2422 859 MobiDBLite consensus disorder prediction 512 579 - -
Ssu3g2422 859 MobiDBLite consensus disorder prediction 365 386 - -
Ssu3g2422 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 857 IPR013083 -
Ssu3g2422 859 MobiDBLite consensus disorder prediction 17 39 - -
Ssu3g2422 859 CDD mRING-HC-C3HC5_NEU1 807 845 - -
Ssu3g2422 859 Pfam Zinc finger, C3HC4 type (RING finger) 804 851 - -
Ssu3g2422 859 PANTHER PROTEIN, PUTATIVE-RELATED 1 858 - -
Ssu3g2422 859 ProSiteProfiles Zinc finger RING-type profile. 807 846 IPR001841 -
Ssu3g2422 859 Coils Coil 243 270 - -
Ssu3g2422 859 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 858 - -
Ssu3g2422 859 MobiDBLite consensus disorder prediction 97 135 - -
Ssu3g2422 859 MobiDBLite consensus disorder prediction 657 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2422 Ssu-Chr3 75752159 75756444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2422 807 853 C3H Transcription Factor Family AT3G06140 42.553 1.54e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2422 - - gmx:100801329 1446.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0627 8 10278788 10283343 Ssu3g2422 3 75752159 75756444 PCT