Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2421 ATGGAATTCTCCAACCGTAGATTGCTTCTGCTGAACGAGGACGTTCCCATCTCCAAGTCCACGCCCCCTCTCCCGCGCACCAATTCATCTCCGCCGCCACAATCCTCAACGGTGTCCGTTCGTCCGGTCTTCGCCTCCAGCGTGGCCTACGTCTTCCTCATCCTCTTCACCACTCTCTTTTTCATCGGCTTCGTCTTAATCTACTTCCGCCAGTTCTCCTCCGACCCCGGCCCCTTCCGCCGCCGCGTTCAGCCTCGCCGGGAGGCGGAGCCCGCCGCGGCGAAGTCCCTGCCGGTTGTCTCGCACCGCGGAGAAGCGGAGTGCGCGATATGTCTGGAGGAGTTCCGAGACGGCGACGCGGCGAAGGTGATTCCGCACTGCAAGCACGTGTTCCACCCGCAGTGCATTGACACGTGGCTCGACAGGCACGTGACGTGCCCCGTGTGCCGGTGCAGCGAGCTGTGTGGAGCGGCGGAGGAAGGAGAAGAGAGTGGAGAGGTGGGGTCTGTGTCAgtgagaggagaagaagaagaagaagtggtTCCAAACTTGGATTAA 558 0.5878 MEFSNRRLLLLNEDVPISKSTPPLPRTNSSPPPQSSTVSVRPVFASSVAYVFLILFTTLFFIGFVLIYFRQFSSDPGPFRRRVQPRREAEPAAAKSLPVVSHRGEAECAICLEEFRDGDAAKVIPHCKHVFHPQCIDTWLDRHVTCPVCRCSELCGAAEEGEESGEVGSVSVRGEEEEEVVPNLD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2421 185 SMART ring_2 108 149 IPR001841 -
Ssu3g2421 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 154 IPR013083 -
Ssu3g2421 185 MobiDBLite consensus disorder prediction 16 38 - -
Ssu3g2421 185 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Ssu3g2421 185 Pfam Ring finger domain 107 150 IPR001841 -
Ssu3g2421 185 PANTHER RING FINGER DOMAIN-CONTAINING 27 166 - -
Ssu3g2421 185 SUPERFAMILY RING/U-box 102 152 - -
Ssu3g2421 185 MobiDBLite consensus disorder prediction 169 185 - -
Ssu3g2421 185 PANTHER RING-H2 FINGER PROTEIN ATL57 27 166 - -
Ssu3g2421 185 MobiDBLite consensus disorder prediction 159 185 - -
Ssu3g2421 185 CDD RING-H2_PA-TM-RING 107 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2421 Ssu-Chr3 75747569 75748126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2421 46 163 C3H Transcription Factor Family AT2G27940 35.811 2.08e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2421 - K10664 gmx:102663476 207.994