Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2418 ATgGAACTAATGTTGCTGCCAACCCCACCATGGCTGGAACGACTATTGTCAACCACATTCTTCTCGATGTGCGAAGCCCACATCAACGCACCCAGAAACGAATGCAACATGTACTGCCTCGATTGCAGAGACCAAGCATTCTGTTTTTATTGCAAACAATCTTGGCATAAGGATCATCAAGTAATTCAAATAAGGAGGTCGTCGTATCATGATGTTGTGAGGGTAGCGGAGATTCAGAAGGTTTTGGATATCAGTGGAGTTCAGACGTATGTGATTAACAGTGCTAGAGTTCTTTTCCTGAATGAGAGGCCTCAGAATCAGCCTAAGACCAATAATGCCGTTGGTGGTGGAAAAAGTAACTCCCACTTGTGTGAAATTTGCAGAAGGAATCTCTTGGACCCTTTTCGTTTCTGTTCTTTGGGATGCAAGcttGTAGGAATAGAGAAGAATGGGAATGCGAGCTTTGTCTTGAGCGCAAAGAAAGACGAAGAAATAGGGAGAATGCCAAGAAGGTTGCCATCAAAGGAAGAATTGCGTGAAGGAATCCACACACAAGTATACCAAAGCACGCCTTCTTCTCATCTAAGGCCATCTCTACAGGCTTGCTCAAATTCAAGGAGAAGAAAAGGGGTACCACATAGGGCACCTTTAGGCccataa 660 0.4379 MELMLLPTPPWLERLLSTTFFSMCEAHINAPRNECNMYCLDCRDQAFCFYCKQSWHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQNQPKTNNAVGGGKSNSHLCEICRRNLLDPFRFCSLGCKLVGIEKNGNASFVLSAKKDEEIGRMPRRLPSKEELREGIHTQVYQSTPSSHLRPSLQACSNSRRRKGVPHRAPLGP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2418 219 MobiDBLite consensus disorder prediction 185 219 - -
Ssu3g2418 219 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 217 - -
Ssu3g2418 219 Pfam PLATZ transcription factor 65 144 IPR006734 -
Ssu3g2418 219 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 217 - -
Ssu3g2418 219 SUPERFAMILY B-box zinc-binding domain 22 66 - -
Ssu3g2418 219 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2418 Ssu-Chr3 75705194 75706544 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu3g2418 PLATZ 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2418 - - gmx:100787414 401.364