Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2414 ATGTCTCGTCGCGGTGGCTCTAAGCAACCCGAGTTCCGTCGTCCTCAACAGTCTCCGGCACCGTCTCCCGCCGGAGCTTCCGGAAGAGGCAGAGGTCGAGGCCGCGGCCGCGTCGGCGGAGAGTCTTCCGCTGCTGCTCCTCCTCCCGCGCATGGACCATCTTTCACCTCGCCGGCTCCGTCCGTCGGCATTCCGTCCGGCTCGGCGCCTGCTCCTGCCTCGCCGCCTCCGACGGCGGAATCTCTGAGTTCCGTGGTGGAGAAGCAACTTACATTGCAAGCTCCGGCGCCGTCGTCGTCGAAGGCGCACCGGTTCCCGGACCGGCCAGGTTTCGGTCGAGCGGGTAGGAAAATCCAAGTGCGGGCGAATCACTTTCAAGTCCAAGTCGCCGTGCAGGATCTGTATCACTACGATGTATCGATCACTCCTGAGATTGCCTCGAAAAAAGTGTCCAGAGATGTAATTGGTTTGTTGGTCCAAGCGCATCGAGAGAAGGTGCTGGGAAATCGCATGCCGGCCTACGATGGACGAAAGAGTCTTTTCACTGCAGGACCCTTGCCCTTCGAATCGAAGGATTTTGTGGTCAAGTTGGAGGACGATGATGAACGAGGCTCGTCTTCTGGTTCTGCTAGGAGAAGGCGTGAACGGGAATTTAGGGTAACAATCCGTTATGCTTCCAAGACGGACCCTCATCATCTTAATCAGTTTCTCAGGCGCCTTCAGCTGGACTGTCCTCAGGAAACTATTCAAGCTCTTGATGTTGTTCTGCGGGCAACACCATCTGAAAGGTATGATGTTGTGGGGAGGTCGTTTTTCTCGCCTCTTTTGGGGCAAATTGGTTCGCTTGGTAGTGGTACTGAGTATTGGAGGGGGTACTACCAGAGCCTTCGCCCAGTTCAGATGGGGCTGTCTCTTAATGTTGATGTGTCCGCGAGGGCATATTATGAGCCGATTCCTGTGATTGACTTCATTATgaagcattttaattttaatcttaataggCCTTTTTCCGATCAAGATCGTGTTAAGGTTAAGAAAGCTTTGAGAGGAGTCAAGGTAGAAGTTACTCATGGACAGATTAGACGTTACAAAGTTACTGGAGTCACAAGAGAACAACTCAGAGAGTTAATGTTTACTGATGACAATGGAACAAGAAAATCGGTTATCCAATATTTTCGTGAGAAATACAATATTACGATGAAGTATTCGATTCTTCCTGCTCTCCAAGCTGGTAGTGATTCTAAGCCAATTTATTTGCCTATTGAGcTTTGTCAGATTGTTGCTGGACAGAGATACACAAAGAGATTGAATGAGGAGCAAGTAACTGCTCTTTTAAGGGCAACCTGTCAGCGTCCTCGTGAAAGAGAAAACTATATCAGACAGGTTGTGAGGCAGTGCAATTTCAACACAGACAAGTTTGTGCAAAATTTTGGAATTCAAGTGAAGCAGGATCCAGCTTTGATTGATGCTCGTGTTTTGCCGCCTCCAATGCTTAAATATCATGACACAGGCAAAGAATCACGTGTTGAACCTTGGATGGGTCAGTGGAATATGATTAACAAGaaaatggtTAATGGTGGCACTGTGCAATATTGGTGTTGCCTCAACTTGTCTGGAAGAACGAACAGAGAGTTGTCATCTCAATTTTGTCATCAATTGGTGGAAATGTGTAACAGCAAGGGAATGCGTTTTAATCCAGAGCCTTTACTGCCTACAACTCCTGGTCAACCTAGTCAAATAGAGAATGCTCTTGTGAATGTTCAAAAGCAGTGTATGACAAAACTAGCAAAGGTGGAGGGAAGACCTTCTCTCCAATTGTTGCTAATAATTTTACCTGATGTCAAGGGGTCTTATGGGAAAATAAAGCGTGTATGTGAAACTGAACTAGGGATAGTATCTCAGTGTTGTCAGCCGAGGCAAGTTGCAAAGATGAACAAGCAATATCTTGAAAATGTGGCCCTCAAGATAAATGTGAAGGTCGGTGGTAGTAACACAGTATTGAATGATGCAATTATGGGAAGAATCCCCAATGTGTCTGATAAACCAACATTAATCCTGGGTGCAGATGTAACACATCCACAGCCAGGGGAAGACTCCAGTCCTTCTATTGCAGCAGTAGTGGCATCCATGGATTGGCCTTTTGTCACAAGGTACAGAGGAATTGTTTCTGCTCAGCCGCATCGGGAAGAAATCATTCAAGATCTTTATAAATCATATCAAGATCCTGTGAAGGGAATTGTGCATTCTGGAATTATCAGggattTACTTCGCGCTTTCTATAATTCAACTCAGCGTAAGCCAGACAGGATTATATTTTACAGAGATGGAGTAAGTGAGGGCCAATTTAGTCAAGTTTTGCTTCACGAGATGGATGCAATTAGAAAGGCTTGTGTCTCACTACAGGAGAACTATTTACCCCGTGTTACTTTTGTGGTGGTACAGAAAAGACATCACACACGTTTATTTCCTCTTGATCATGGAAGTCGTAATCAGACAgataaaagtggaaatataatgcCAGGTACGGTTGTAGACACGACCATTTGCCACCCTCgggaatttgatttttatctcAACAGTCATGCTGGAATTCAGGGAACTAGTCGACCAACTCATTATCATGTCTTGTTCGATGAAAATAATTTCACCGCTGATCAGTTGCAgacttttacaaataatttatgttatacgtATGCAAGGTGTACTCGATCGGTTTCAATAGTTCCTCCCGCATATTATGCCCACCTGGCCGCTTTCCGTGCGCGCTACTACATTGAAGGTGAAGCATCAGATGCTGGCTCTGCAAGTGGAAGCAGGAGTACAAAATTTGAGGTGACCTTGCCCTCAGTCAAGGATAATGTCAAAGACGTAATGTTTTTCTGCTGA 2886 0.4487 MSRRGGSKQPEFRRPQQSPAPSPAGASGRGRGRGRGRVGGESSAAAPPPAHGPSFTSPAPSVGIPSGSAPAPASPPPTAESLSSVVEKQLTLQAPAPSSSKAHRFPDRPGFGRAGRKIQVRANHFQVQVAVQDLYHYDVSITPEIASKKVSRDVIGLLVQAHREKVLGNRMPAYDGRKSLFTAGPLPFESKDFVVKLEDDDERGSSSGSARRRREREFRVTIRYASKTDPHHLNQFLRRLQLDCPQETIQALDVVLRATPSERYDVVGRSFFSPLLGQIGSLGSGTEYWRGYYQSLRPVQMGLSLNVDVSARAYYEPIPVIDFIMKHFNFNLNRPFSDQDRVKVKKALRGVKVEVTHGQIRRYKVTGVTREQLRELMFTDDNGTRKSVIQYFREKYNITMKYSILPALQAGSDSKPIYLPIELCQIVAGQRYTKRLNEEQVTALLRATCQRPRERENYIRQVVRQCNFNTDKFVQNFGIQVKQDPALIDARVLPPPMLKYHDTGKESRVEPWMGQWNMINKKMVNGGTVQYWCCLNLSGRTNRELSSQFCHQLVEMCNSKGMRFNPEPLLPTTPGQPSQIENALVNVQKQCMTKLAKVEGRPSLQLLLIILPDVKGSYGKIKRVCETELGIVSQCCQPRQVAKMNKQYLENVALKINVKVGGSNTVLNDAIMGRIPNVSDKPTLILGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYRGIVSAQPHREEIIQDLYKSYQDPVKGIVHSGIIRDLLRAFYNSTQRKPDRIIFYRDGVSEGQFSQVLLHEMDAIRKACVSLQENYLPRVTFVVVQKRHHTRLFPLDHGSRNQTDKSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENNFTADQLQTFTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGEASDAGSASGSRSTKFEVTLPSVKDNVKDVMFFC 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2414 961 Gene3D - 675 961 IPR036397 GO:0003676
Ssu3g2414 961 ProSiteProfiles Piwi domain profile. 606 926 IPR003165 GO:0003676
Ssu3g2414 961 Pfam Argonaute linker 2 domain 454 500 IPR032472 -
Ssu3g2414 961 SMART PAZ_2_a_3 322 453 IPR003100 GO:0005515
Ssu3g2414 961 PANTHER PROTEIN ARGONAUTE 1D 77 940 - -
Ssu3g2414 961 CDD PAZ_argonaute_like 317 427 - -
Ssu3g2414 961 MobiDBLite consensus disorder prediction 78 98 - -
Ssu3g2414 961 Pfam PAZ domain 329 444 IPR003100 GO:0005515
Ssu3g2414 961 Gene3D paz domain 312 432 - -
Ssu3g2414 961 SUPERFAMILY PAZ domain 313 469 IPR036085 GO:0005515
Ssu3g2414 961 SMART DUF1785_2 265 317 IPR014811 -
Ssu3g2414 961 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 77 940 - -
Ssu3g2414 961 SMART Piwi_a_2 606 926 IPR003165 GO:0003676
Ssu3g2414 961 Pfam Mid domain of argonaute 511 587 IPR032473 -
Ssu3g2414 961 ProSiteProfiles PAZ domain profile. 318 428 IPR003100 GO:0005515
Ssu3g2414 961 CDD Piwi_ago-like 472 925 IPR045246 -
Ssu3g2414 961 Pfam Argonaute linker 1 domain 267 315 IPR014811 -
Ssu3g2414 961 Gene3D - 492 669 - -
Ssu3g2414 961 SUPERFAMILY Ribonuclease H-like 601 926 IPR012337 -
Ssu3g2414 961 MobiDBLite consensus disorder prediction 1 113 - -
Ssu3g2414 961 Pfam N-terminal domain of argonaute 116 256 IPR032474 -
Ssu3g2414 961 Pfam Piwi domain 607 925 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2414 Ssu-Chr3 75529560 75570888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2414 70 961 Eukaryotic Initiation Factors Gene Family AT1G48410 57.906 0.0 1062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2414 K11593 - gmx:100805246 1402.5