Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2412 atgaaaaagAATACAATATATTCCTTCTCCACACACCAATCCGCTATCTCAACTCAATTCTCGCTTCTCAGACATGTGACTCTGCCTCCTGAAGTAACCAAACTGCTTCCCAAGAATCGGCTTCTCTCCGaaAATGAGTGGCGGGCGATTGGGGTTCAGCAGAGTTGTGGTTGGGTTCATTATGCAATTCATCGCCCTGAGCCACAAATAATGCTTTTCAGGAGGCCTTTGAATTGTCAGCAGCAGCAGGAAAACCAGGCCCAAGCCCAAATTATTTGCCAATTTTCAGAGCAGCAGCCAGATAtctga 309 0.4466 MKKNTIYSFSTHQSAISTQFSLLRHVTLPPEVTKLLPKNRLLSENEWRAIGVQQSCGWVHYAIHRPEPQIMLFRRPLNCQQQQENQAQAQIICQFSEQQPDI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2412 102 Pfam Cyclin-dependent kinase regulatory subunit 24 76 IPR000789 GO:0016538
Ssu3g2412 102 SMART CKS_2 17 78 IPR000789 GO:0016538
Ssu3g2412 102 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 24 91 - -
Ssu3g2412 102 SUPERFAMILY Cell cycle regulatory proteins 23 89 IPR036858 GO:0016538
Ssu3g2412 102 Gene3D - 5 90 IPR036858 GO:0016538
Ssu3g2412 102 PRINTS Cyclin-dependent kinase regulatory subunit signature 24 38 IPR000789 GO:0016538
Ssu3g2412 102 PRINTS Cyclin-dependent kinase regulatory subunit signature 61 75 IPR000789 GO:0016538
Ssu3g2412 102 PRINTS Cyclin-dependent kinase regulatory subunit signature 46 60 IPR000789 GO:0016538
Ssu3g2412 102 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 24 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2412 Ssu-Chr3 75472209 75481185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2412 24 88 Core Cell Cycle Gene Families AT2G27970 84.615 9.72e-36 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2412 K02219 - ming:122069953 122.094