Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2411 ATGGAGAGGAGTGACGGATACAGTTCAGAGCAGGAATGCATGGAGGATTATAGGCGTGGAGGGTACCACGCGGTTCGAGTTGGCGACACTTTCAACAATGGCCGCTACGTCGTGCAATCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGCGATATGTAGCCCTTAAAATTCAGAAGAGTGCGCAGCACTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAGTAGCCGAGGGGGACCTGGATGACAAGAAATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCGGGCCCTAATGGCCAGCATGTATGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATCAAGTATAGTGACCATCGCGGGGTTCCTGTCCCCATGGTTAAAGAAATCTGTTTACATATTTTGGTGGGCTTGGATTACTTGCATCGTGAGCTTTCTGTCATACACACTGATTTGAAGCCAGAGAATGTGTTGCTTCTGTCACTGATAAATCCATCTAAAGATCCTAGGAAATCAGGTGCTCCACTCATCCTTCCGAACACCAATGATAAGGCTGCGTCCAATAATGGGACTAACCAAgacaataaaattttgaatggaGATCCGATGAAGaaccagaaaaagaaaatgcagAGGAAGGCAAAGGTAGCTCAAGGCTGTGTCGAGAAGGAAACTTCAGAGGAAGCTGAGGATTATAAAGGATCTGAGCAAGAAGATTGTGGCAATGATGTGAAATCAAGCATGGGATCTGTTGAAGATAAAACTAATAGTTCTTTGCTTAAAGATGAATCAACAAAGACTTTTGAAAAGGATGTTTCACAAGGAAGTCATAGTCATAGGAGAGGCAGCAGTTCCATGAGAAAGAAGTTGCTGGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAGTGCTTGTTGGACTTACAAACAATTCACAAATGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCCAAATACTCAACCCCGGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTAACAGTGGGGACAACTATGATAGAGATGAGGATCATCTGGCGCTGATGATGGAGCTTCTTGGGGTGATGCCTCCCAAGATTGCACTAGGTGGCCGCTATTCCCAAGAATTTTTCAACAGACATGGTGAGTTGAGGCACATCAGCAATTTGCGATTCTGGCCAATGGATAAGGTGTTGATGGAGAAGTATAATTTTAGCGAGCAAGACACAAATGACTTGGTTGACTTCCTTATTCCAATACTTGATTTCGTCCCAGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCATGGTTGAGTGCAGGTCCTCGGACTCTTGAGCCCTCAATAACTACCATGCAACCTGATGCCATCAATGAGGAATTGTCTGAAAGGAGGAAGGGGGAAAGGGCGGAGAAGGAGGCAGTGGAAACTGGTTTGAGGAATATAGCCATTAAAGGAACTCCTGAGCCTCTCAAAGACTCCCAACCTCTAAAGTCATCCAAATAG 1614 0.4374 MERSDGYSSEQECMEDYRRGGYHAVRVGDTFNNGRYVVQSKLGWGHFSTVWLAWDTLNSRYVALKIQKSAQHYTEAAMDEIKILKQVAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDHRGVPVPMVKEICLHILVGLDYLHRELSVIHTDLKPENVLLLSLINPSKDPRKSGAPLILPNTNDKAASNNGTNQDNKILNGDPMKNQKKKMQRKAKVAQGCVEKETSEEAEDYKGSEQEDCGNDVKSSMGSVEDKTNSSLLKDESTKTFEKDVSQGSHSHRRGSSSMRKKLLAAVDLKCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPNSGDNYDRDEDHLALMMELLGVMPPKIALGGRYSQEFFNRHGELRHISNLRFWPMDKVLMEKYNFSEQDTNDLVDFLIPILDFVPEKRPTAAQCLSHPWLSAGPRTLEPSITTMQPDAINEELSERRKGERAEKEAVETGLRNIAIKGTPEPLKDSQPLKSSK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2411 537 SUPERFAMILY Protein kinase-like (PK-like) 30 485 IPR011009 -
Ssu3g2411 537 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Ssu3g2411 537 MobiDBLite consensus disorder prediction 186 300 - -
Ssu3g2411 537 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 535 - -
Ssu3g2411 537 Pfam Protein kinase domain 36 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2411 537 Pfam Protein kinase domain 311 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2411 537 PANTHER SERINE KINASE-LIKE PROTEIN 5 535 - -
Ssu3g2411 537 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Ssu3g2411 537 MobiDBLite consensus disorder prediction 257 271 - -
Ssu3g2411 537 Gene3D Transferase(Phosphotransferase) domain 1 119 475 - -
Ssu3g2411 537 MobiDBLite consensus disorder prediction 496 514 - -
Ssu3g2411 537 SMART serkin_6 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2411 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Ssu3g2411 537 MobiDBLite consensus disorder prediction 197 216 - -
Ssu3g2411 537 MobiDBLite consensus disorder prediction 231 256 - -
Ssu3g2411 537 ProSiteProfiles Protein kinase domain profile. 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2411 537 MobiDBLite consensus disorder prediction 272 293 - -
Ssu3g2411 537 MobiDBLite consensus disorder prediction 496 537 - -
Ssu3g2411 537 CDD STKc_SRPK 25 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2411 Ssu-Chr3 75455369 75459722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2411 7 523 EF-hand Containing Proteins AT5G22840 66.027 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Ssu3g2411 Pkinase 2.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2411 K08832 - gmx:100790060 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2411 3 75455369 75459722 Ssu3g2411 3 75455369 75459722 ECH
Ssu8g0639 8 10539846 10543048 Ssu3g2411 3 75455369 75459722 PCT