Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2403 ATGGAACCGCCAGTTGCGAGATCGAGGGGCCGCCCgaggaaaaggagaagaaaagaggagGAGAATGAGAGCGAGGCGAAGAGGCAGGCCATGGGGACGCGGGCGATAGCGTTGGTTGGGAGGTACGTGCTGAAGGATTTTCCCAGAAATGGAGTTTTTCTCGGGAAGGTTGTGTATTATGAGTGCGGGTTGTATAGAGTTAGTTACGAGGATGGTGATTTTGAGGATTTGGATAGTGGTGAGGTTCGCGCGATACTTGTGAATGATGGTGATTTTGATGATGATCTGGCGCGGAGGAGGGGGGAATTGGAGGAATTAGTGTCGCAGAATAGTGGAAAGGGTGAAGGTGGTTCGGAGAAGGGCACTACTGAAGGGAGTAAGGAGGAATTGGTGGTTGGAGGGAGTGAATTGAACTTTGGATTAGTGGTTGAAAATGACGACGGGGATGGGagtgatgatggtgatgatgtgGATGGTGATTCGTCGAGTGACTCAGGTTTGGGGGGAAGGGATTCTGGGACTGAGGCTGAGGCACTGCTGCCTTTGCCGCCACCGCCGGAGTTGCCGGCGTCGTCTGGAACCATTGGTGTTCCAGAGCAGTGTGTCTCACACCTCCTTGCTGTGTATGGATTCCTTAGATCGTTCAGCATTCGGTTGTTTCTGCTGCCGTTTACTTTGGATGAGTTCGTTGGTGCTCTTAATTGCCGCGTTGCAAACACCTTGTTTGATGCCATTCATGTTTCCCTCATGAGGGTGTTGCGGCGTCATCTTGAAACTGTCTCATTGGAGGGCTCGGAGCTTGCTTCAAAATGCCTTAGGTGCAATGATTGGAGCTTGCTTGATCCATTGACTTGGCCTGTCTTTCTGATTCAGTATTTAGTAGTCAGTGGATACACAGATGGACATGAATGGAAAGGATTTTATGAAGAGGTTTCCACCggtgaatattatttattagcTGTAAGTAGGAAGCTAATAATATTGCAAATTCTCTGTGATAATGTTTTGGAATCTGAGGAGATGATAACTGAAATAAACATGCGGAGAGAATCAGAGGTTCCGGATTATGATGGAGAAGACATACTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGATACACTAATACATCAGCTTTTGAGGATAAAGAAGCTGCAAAGTTTGTTTCAGCTTCAAATGCTCTGGACCAGCCTGGGAActctatttcaaatttcagaGATACAGAAAGTATCGACGATGGTGATGCTGATAGAAATGGCGATGAATGTTGCCTCTGTGGTATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCCAGGTGTATTGGTGTGACTAAAATGTCTTTACCAGAAGGCCCGTGGTATTGTCCAGAGTGCAAAATTAATATGACGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACTTGCGAACACTTACTTGTGCTGAATATTGGCAGTGATGAATATTGTCTTAGATATTACAATCAGAATGACATTCCCAAGGTTCTCCAAGTGCTTTATGAATCCATGCGGCATAGACCAATATACCATGATATTTACATGGCAGTGCTGCAATATTGGAGTGTTCCAGAAAGTTTCTTGTTGCATTCTGTTTCAACTGGAACAAATTTAAACTCAGCAAATATAAAGGAAGAGACAAAGCCCTTTACTTCTTTACTTCCTCCTCTGGGTGAAGGCAACCATAAACCTGTTAGGTTGGTGAAGGAAGAGTATCCTTTAACCACTGTGAGTACAATTTACAGTGATAATATGGTGCCATCTCTTAATGCTTCATCAGTTACTGCTCTAAGTCCCGCTCCTCAGTGCAATGGCAATGGTAGCAGTAATGAGTGCCCTACTGTGACTACAAAGCTTCCTGAGTACACTAGGATGGAGTCCATTGTCTCAGCTGATTCTGCTTCTGTTGCTGTTAGTAATCAATCTGACATGaactatcaaaattttgttgataGGCCAACTGCGGTAGATCCTGCCAAGTGCTCTTTGGTAAATGgtcaatttagtaattatggtCATGCAAATGATACAGGGTTCCCTATAAATCTTTCTTTGCAAACCAAGGCAAGCACCCAAACAGGTTTTGGAAAGTGTGAACGCAATGTAACCAATGATTTTGCATACATGGGTTTCTCCTACAAGCCTCTGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCCTGCTTTCCTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCTGACAATCAGAGGAAAACTGCATCTGGAAACACTTACTTGCAAGCAAAAGCGTTCTTGTTAACAGCTTCACGTTTCTTTTGGCCGAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAAAGTGCTATAAAAATCCTTGCTGGTTTTTCTCCTATAAGGAGTGGAGAGGGAATACTCCCTAGTATTGCTACTTACATTGTATACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGGCAATGGCGTAAGCAAGTGGAACAGGCCACAACATTTAGTGCTATCAAGCCACTTTTACTTAAActTGAGGAGAACATTCGAACGATTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCTACTCTTGGAACAGCACAGAAACGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGATGAAGCTACAACTGATGGTTGCCCTAAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACTAAATTTATATTCCAGAAAGCAGTCTTGCCAAACTCCATGGTCAGAAAAGCAGCGCGTcaagGTGGTTCGAAAAAAATTCCAGGCATCTTCTATGCTGATGGCTTCGAAATCCCTAAAAGAAGTAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGACCAGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGTTATTATGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTGTTGAAATAGAGCAAGGTCCAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAACACGTATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGGAAACGTGACATGTAATGAAGAGCACTTGAATACTGCATCTGAGTTACACAGAAGGCGGTTGAAAGCTATCTGCAAGGACACATTTTTTTACCTTACCTGCAAGAGAGATAACTTGGATGTGGGGCCGTGTTCTGTATGTCAGATAGCTGTTATAATTCGGGATGCTCACAAGTGTAATGCATGTCAAGGCTATTGTCATGAGGGCTGTTCCACAAGTTTAACAGTCGCTGCAAATGAAGTTGACTACTTAACCACATGCAAGCAATGTTACCATTCCAGAGTGCTTGCTCAGAAAGAGACTACTCATGAATCTCCAACCAGTCCATTAGTCCTACAAGGACGAGAGAATAACTCTGGGACATTTGTGAAGGCATCAAGGCCTAAATGCCATGATCAAGTACCGAAATCTTCCAGGACAAAGGCTAGTAATCCTGACACAAAACAAGTTACTTCTGTGTCGGTTTTGAAAGGAAGAAAGGCTAAATCTTATGAACAAGAACTGACTTCTACCAGGACAAAGGATAATCATTTTGACATGCAACAAGTTGCTTCTGATGCCACTTCAGCAGGAAAACGCCCTCGCAAAAATTGTTCTTGGGGTATtatatggaaaaagaaaaataatgaagatacAGACAATGATTTCAGGCTCAGAAACATACTTTTAAAAGGGGGTTCAAGCATGCCGCAATTAAAACCTGTTTGTCACTTGTGTCGTAAGCCATATATGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCTAGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTTTGTCCTTACTCTGATTCGAAGCCTAAGAGACAAGAGGGCAAGAAGTCACGCACGAGGGCTACAAAGAAAGAGTATTCTGGAGCAGATTCCGATTCTGGAGCAATCTCTGATATGAGAGAGTGTGAGCCTGCCACTCCCGTCTTTCCTGTAGAGCATGATCCTGCTCCTGTCTTTCCTGTAGAGGATGatcctcttcttttctctctttcgaGTGTTGAGCTGATAACAGAACCTAAGGTAGATGGGGATGTTGAGTGGAACAGTATCTCTGGGCCAGGGCTTCAGAAACTGCCAGTGAGAAGGAGTGTTAAGCATGAGGGGGATGATGTTTCTTTTGGAGGTATACCTTTACATGCTGAATTCTCAACCTACGGTGAGACAGGTAATCTGTCCAATCCTGCAGAGGTGTCTTCACCTTTAGAATATGCCTCTGCTGTGAACTTTGACAACAAGTTTCTGAATGACTCtgataatgtaaattatgattacATGGATTTTGAACCTCATACCTACTTCTCTGTAACGGAATTGCTGCACCCAGATGATGGTAGTCGGTTTGAGGGAGTTGATGTGTCTGGGGACTTGTCAGGATATTTGGAAAATTCTAGTACCCTTGTTCCTGAAGAATGTGGAGATGTTAGTTTGGTAGATAAAGCAGAACCTGCATTTTCATTGCAAGACACCGGTTAtagttgttgtaaatgtttaCAAATGGAACCAGTCCCCGATCTCTGTTGTGAGATTTGTGGGACATTGATTCACAGCCAATGTTTGCCTTGGGTTGAATTATCATCTGGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGGGAATGGTAA 5166 0.4208 MEPPVARSRGRPRKRRRKEEENESEAKRQAMGTRAIALVGRYVLKDFPRNGVFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRAILVNDGDFDDDLARRRGELEELVSQNSGKGEGGSEKGTTEGSKEELVVGGSELNFGLVVENDDGDGSDDGDDVDGDSSSDSGLGGRDSGTEAEALLPLPPPPELPASSGTIGVPEQCVSHLLAVYGFLRSFSIRLFLLPFTLDEFVGALNCRVANTLFDAIHVSLMRVLRRHLETVSLEGSELASKCLRCNDWSLLDPLTWPVFLIQYLVVSGYTDGHEWKGFYEEVSTGEYYLLAVSRKLIILQILCDNVLESEEMITEINMRRESEVPDYDGEDILPSEVGLRRVQPRYTNTSAFEDKEAAKFVSASNALDQPGNSISNFRDTESIDDGDADRNGDECCLCGMDGTLLCCDGCPSAYHSRCIGVTKMSLPEGPWYCPECKINMTGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGSDEYCLRYYNQNDIPKVLQVLYESMRHRPIYHDIYMAVLQYWSVPESFLLHSVSTGTNLNSANIKEETKPFTSLLPPLGEGNHKPVRLVKEEYPLTTVSTIYSDNMVPSLNASSVTALSPAPQCNGNGSSNECPTVTTKLPEYTRMESIVSADSASVAVSNQSDMNYQNFVDRPTAVDPAKCSLVNGQFSNYGHANDTGFPINLSLQTKASTQTGFGKCERNVTNDFAYMGFSYKPLSYINYYMHGDFAASAAAKFALLSSEESRSEGHVSDNQRKTASGNTYLQAKAFLLTASRFFWPSSEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAALSATKSAIKILAGFSPIRSGEGILPSIATYIVYMEECLRGLVVGPFLSASYRRQWRKQVEQATTFSAIKPLLLKLEENIRTIAFCGDWVKLMDDWLVEFSMVQSATSTLGTAQKRAPSGRRYKKRSAIDEATTDGCPKNFVWWRGGKFTKFIFQKAVLPNSMVRKAARQGGSKKIPGIFYADGFEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDNKLVEGKSYYGIAFGSQKHLPSRVMKNVVEIEQGPEGKEKYWFSETRIPLYLVKEYEEGNGNVTCNEEHLNTASELHRRRLKAICKDTFFYLTCKRDNLDVGPCSVCQIAVIIRDAHKCNACQGYCHEGCSTSLTVAANEVDYLTTCKQCYHSRVLAQKETTHESPTSPLVLQGRENNSGTFVKASRPKCHDQVPKSSRTKASNPDTKQVTSVSVLKGRKAKSYEQELTSTRTKDNHFDMQQVASDATSAGKRPRKNCSWGIIWKKKNNEDTDNDFRLRNILLKGGSSMPQLKPVCHLCRKPYMSDLMYICCETCQNWYHAEAVELEESKISSVLGFKCCKCRRIKSPVCPYSDSKPKRQEGKKSRTRATKKEYSGADSDSGAISDMRECEPATPVFPVEHDPAPVFPVEDDPLLFSLSSVELITEPKVDGDVEWNSISGPGLQKLPVRRSVKHEGDDVSFGGIPLHAEFSTYGETGNLSNPAEVSSPLEYASAVNFDNKFLNDSDNVNYDYMDFEPHTYFSVTELLHPDDGSRFEGVDVSGDLSGYLENSSTLVPEECGDVSLVDKAEPAFSLQDTGYSCCKCLQMEPVPDLCCEICGTLIHSQCLPWVELSSGLGSWRCGNCREW 1721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 143 193 - -
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 1274 1310 - -
Ssu3g2403 1721 PANTHER PHD FINGER FAMILY PROTEIN 1 1306 - -
Ssu3g2403 1721 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 302 345 IPR028942 -
Ssu3g2403 1721 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1305 1719 - -
Ssu3g2403 1721 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1306 - -
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 1450 1469 - -
Ssu3g2403 1721 CDD PHD_SF 1674 1718 - -
Ssu3g2403 1721 SUPERFAMILY FYVE/PHD zinc finger 395 467 IPR011011 -
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 146 160 - -
Ssu3g2403 1721 Pfam DDT domain 200 256 IPR018501 -
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 1 30 - -
Ssu3g2403 1721 Pfam PHD-finger 424 466 IPR019787 -
Ssu3g2403 1721 ProSiteProfiles DDT domain profile. 199 259 IPR018501 -
Ssu3g2403 1721 SMART PHD_3 1197 1245 IPR001965 -
Ssu3g2403 1721 SMART PHD_3 423 466 IPR001965 -
Ssu3g2403 1721 SMART PHD_3 1674 1719 IPR001965 -
Ssu3g2403 1721 SMART PHD_3 1389 1437 IPR001965 -
Ssu3g2403 1721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1378 1453 IPR013083 -
Ssu3g2403 1721 SUPERFAMILY FYVE/PHD zinc finger 1388 1443 IPR011011 -
Ssu3g2403 1721 SMART testlast3 199 259 IPR018501 -
Ssu3g2403 1721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 486 IPR013083 -
Ssu3g2403 1721 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 1446 1479 - -
Ssu3g2403 1721 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Ssu3g2403 1721 PANTHER PHD FINGER FAMILY PROTEIN 1305 1719 - -
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 104 129 - -
Ssu3g2403 1721 MobiDBLite consensus disorder prediction 1291 1310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2403 Ssu-Chr3 75355524 75364490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2403 289 568 EF-hand Containing Proteins AT5G22760 46.853 7.44e-67 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu3g2403 DDT 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2403 - - gmx:100808261 2548.47