Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2402 ATGGAGCAGCAGAACCGTACGGACACTGATCAGTTTTTGACTCTGGGCCCCACACTGAACGAGCCACACACTCCTAAGGAGGCAGGGGCGCAcgccaacaacaacaacaacaacaacggtGTTAACCTTGGAGTTGGTTCTGCTTCGGACCTTGTTGTGACCGTAGCAAGGTCCGAGGCTGTAGGTTCGGGACAGGGGGTGAAGAGAGGGAGGGGGAGGCCTCGGAAGTACGACGCTGTCGGGAGCGCGGTGGTTCCGGCGACGGCGCCGCCGGGATTTTCCGATCACGCTGCCAAGAGAGGCAGGGGACGCCCTCGTGGTTCTGGGAAACTGCAAATTCTAGCTTCCATTGGTGGGTTTGTAGCAGAAACAGCTGGGGGAAGCTTCATACCTCACGTGCTGACTGTGAACAGTGGGGAGGATGTGGTGGGCAAGATAATGTCATTTTTTGACAAAGGCCCTCGAGCGGTTTGCGTACTTTCTGCTACTGGTACTGTTTCAAGTGTGGTCTTTCGCAAACCTCCTGCTTCTGGTCATGGTACTTTGAGATGTGAGGGCCGCTTCGAGATATTATCTTTGTCTGGATCATGTACCTACGCTAGTAGCGCTAATGGTGCAGTCCATAAAACTGGCAAGTTGAGCATTTCATTGGCTAAACCTGATGGGACGGTTTTTGGAGGTGTCATTGAGAGCTCATTGGTAGCAGCTTGCCCTATTCAACTTGTTATGGCCACTTTCAAGCAAAACATCAGTAATCAAATCAAGAGAAAACAGTTGTCTGAATCTTCTAATGCTCCCATTATAATGGCCAATCCAAATTCAGAAAGGGATCAACTGAAAGTTCCAAGGTTGACAGAAGGAGAGAAGAGTTGTCCTTCACCAACAACAGGACTTGAgccaacagcaacaacaactaaTGGTGTAGCAGATAATGTCTTTCCTGCCACATCCAATGGAGTGGCAGATTATGCTACTCCTCCAGATCACAATATGCTCCCTGTCTCTGTTAATGGTGTTGATTTGGACTGCCAGACCCCGCAGCCCGTAACAGACCAACGGATAACTGCAGATGTGAATGCAAGTGTTATAGAGTTATAA 1098 0.4763 MEQQNRTDTDQFLTLGPTLNEPHTPKEAGAHANNNNNNNGVNLGVGSASDLVVTVARSEAVGSGQGVKRGRGRPRKYDAVGSAVVPATAPPGFSDHAAKRGRGRPRGSGKLQILASIGGFVAETAGGSFIPHVLTVNSGEDVVGKIMSFFDKGPRAVCVLSATGTVSSVVFRKPPASGHGTLRCEGRFEILSLSGSCTYASSANGAVHKTGKLSISLAKPDGTVFGGVIESSLVAACPIQLVMATFKQNISNQIKRKQLSESSNAPIIMANPNSERDQLKVPRLTEGEKSCPSPTTGLEPTATTTNGVADNVFPATSNGVADYATPPDHNMLPVSVNGVDLDCQTPQPVTDQRITADVNASVIEL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2402 365 MobiDBLite consensus disorder prediction 29 43 - -
Ssu3g2402 365 CDD DUF296 131 246 IPR005175 -
Ssu3g2402 365 MobiDBLite consensus disorder prediction 1 43 - -
Ssu3g2402 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 252 - -
Ssu3g2402 365 Gene3D - 131 264 - -
Ssu3g2402 365 MobiDBLite consensus disorder prediction 289 307 - -
Ssu3g2402 365 MobiDBLite consensus disorder prediction 1 18 - -
Ssu3g2402 365 PANTHER DUF296 DOMAIN PROTEIN 37 320 - -
Ssu3g2402 365 MobiDBLite consensus disorder prediction 88 107 - -
Ssu3g2402 365 SMART AT_hook_2 99 111 IPR017956 GO:0003677
Ssu3g2402 365 SMART AT_hook_2 68 80 IPR017956 GO:0003677
Ssu3g2402 365 MobiDBLite consensus disorder prediction 285 307 - -
Ssu3g2402 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 320 IPR039605 GO:0003680
Ssu3g2402 365 ProSiteProfiles PPC domain profile profile. 126 267 IPR005175 -
Ssu3g2402 365 PRINTS AT-hook-like domain signature 97 108 IPR017956 GO:0003677
Ssu3g2402 365 PRINTS AT-hook-like domain signature 68 78 IPR017956 GO:0003677
Ssu3g2402 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 247 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2402 Ssu-Chr3 75322278 75327909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2402 67 258 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.667 9.57e-44 153