Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2397 ATGGAAGTTCCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTGGGGCAAGCTGTTAAGGTAGACCCAACGGATCCAGTGAATGCGTACATACATGTTTCTCAGGTTGCACTTGGAGAGGCAAAGAAAGACAAAGCAAGTGAACCTGTGGTTCTGTACTTGAAAGTTGGTGACCATAAGATTGTTTTGGGAACCCTTTCTAGGGATGACATCCCTCATCTATCTTTGGATTTGGTTCTAGACTCCGAGTCTGAGCTTTCCCACAATTCAAAAAGTGCCAGTGTCTATTTTTGTGGATACAAAGTTCTAACTGATGAGGGCAATGTATCCGACTTTTCTGATTTTGATGACGATCTTGCGCTGGAGTGCCAAGATAATAGAAAACCTGAAATTAAAGCTGAAGGTGCAAAGGTTACTAAACCTTCTAAACCTGTTCCCATGATTGGTGCATCAGCAAAACAGGTTAAGGCTGTTGATCCGAAGAAAGATGAGGAGGATGAATCCGATGATGATTCTGATGATGAGTTAGCTAGTGAAGATAAATCTGGAAGTTCAGATGAGATGGATGATGATAGTGATAGTGATGAGGAGAGTGAGagtgatgaagatgatgaagagaCCCCTGCTAAGAAGGTGGATCAGGGCAAGAAGATACCCAACGAGTCTGCATCAAAAACTCCAGTTTCTACCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAAGTGTACATATAGCAACTCCTTATCCTACAAAGAAAGGCGGAAAGACTCCCAACAGTACTACAAAAGGCCAGACTACCAATTCTGCTGGACAACTATCTTGCGCAAGTTGTAAAAAGTCTTTCACCAACGAATTTGGTCTGCAACAACATAAAAAGGCTAAGCATGGTGGTCAGTGA 909 0.4125 MEVPMEFWGVEVKVGQAVKVDPTDPVNAYIHVSQVALGEAKKDKASEPVVLYLKVGDHKIVLGTLSRDDIPHLSLDLVLDSESELSHNSKSASVYFCGYKVLTDEGNVSDFSDFDDDLALECQDNRKPEIKAEGAKVTKPSKPVPMIGASAKQVKAVDPKKDEEDESDDDSDDELASEDKSGSSDEMDDDSDSDEESESDEDDEETPAKKVDQGKKIPNESASKTPVSTKKAKNATPEKTDGKKSVHIATPYPTKKGGKTPNSTTKGQTTNSAGQLSCASCKKSFTNEFGLQQHKKAKHGGQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2397 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 302 IPR013087 -
Ssu3g2397 302 ProSitePatterns Zinc finger C2H2 type domain signature. 278 299 IPR013087 -
Ssu3g2397 302 MobiDBLite consensus disorder prediction 256 275 - -
Ssu3g2397 302 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 298 - -
Ssu3g2397 302 MobiDBLite consensus disorder prediction 218 233 - -
Ssu3g2397 302 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Ssu3g2397 302 Gene3D Nucleoplasmin core domain 2 107 - -
Ssu3g2397 302 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 298 - -
Ssu3g2397 302 MobiDBLite consensus disorder prediction 131 275 - -
Ssu3g2397 302 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2397 Ssu-Chr3 75222915 75225578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2397 5 299 C2H2 Transcription Factor Family AT5G03740 38.730 1.94e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2397 NPL 2.2e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2397 - - gmx:547649 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2397 3 75222915 75225578 Ssu3g2397 3 75222915 75225578 ECH
Ssu8g0654 8 10757059 10760039 Ssu3g2397 3 75222915 75225578 PCT