Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2382 aTGGACTTCGAGAATAACGAATCTCCTCATTCCACTTCACCATCATCCCCGTCTTCTACTTGTTGCCAATTGCTCTCACCACCAAACCCTACTCTATTATGTGATTCTTCAAATCCACGACCGAGTAATGCATCTCACAAGAGGAAAGCGGGGAGAAAAAAGTTTAGGGAGACACGGCACCCGGTGTATAGGGGTGTACGGCAAAGAAACGGGAACAAATGGGTGTGTGAAATAAGGgaaccaaacaaaaaatcaaGGATTTGGGTAGGGACTTACCCTACTCCCGAAATGGCTGCTAGGGCACATGACGTGGCAGTCTTAGCACTCAGCGGCACCTCGGCCAAGTTCAATTTCCCCGATTCGCTCTCGCTTCTCCCACTTGCAAAGTCGTGTTCCGCTATAGATATTAGAGCAGCAGCAGCCAAAGCTACTACTACCGATGAAGCTTCCAAACCAAACACTGCCTTTTCTTCCTCTCACAAAAACAATTCGTTTGGCGAAAATGGGAATGCCGGAGACCCTTGTTTGAACATGATCAGCATGCACGGATTAATGGAGGGTACACGTGATAATGACGAATCCGGTACAATGTTTTTTGATGAGGAGGCACTGTATAACATGCCAGGTTTGTTGGATAGTATGGCAGAGGGTTTGCTTATTACCCCGCCGTCTACGAAAAGAGCAATGGATTGGGACGATATTGGTTGTGAAAGTGAAATAGACCTGACTCTGTGGACCAACTAA 744 0.4597 MDFENNESPHSTSPSSPSSTCCQLLSPPNPTLLCDSSNPRPSNASHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEIREPNKKSRIWVGTYPTPEMAARAHDVAVLALSGTSAKFNFPDSLSLLPLAKSCSAIDIRAAAAKATTTDEASKPNTAFSSSHKNNSFGENGNAGDPCLNMISMHGLMEGTRDNDESGTMFFDEEALYNMPGLLDSMAEGLLITPPSTKRAMDWDDIGCESEIDLTLWTN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2382 247 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Ssu3g2382 247 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Ssu3g2382 247 Pfam AP2 domain 61 110 IPR001471 GO:0003700|GO:0006355
Ssu3g2382 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 247 IPR045277 GO:0003700
Ssu3g2382 247 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 247 - -
Ssu3g2382 247 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Ssu3g2382 247 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Ssu3g2382 247 MobiDBLite consensus disorder prediction 45 60 - -
Ssu3g2382 247 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Ssu3g2382 247 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Ssu3g2382 247 MobiDBLite consensus disorder prediction 1 60 - -
Ssu3g2382 247 MobiDBLite consensus disorder prediction 1 44 - -
Ssu3g2382 247 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2382 Ssu-Chr3 75004129 75004872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2382 33 246 AP2-EREBP Transcription Factor Family AT5G51990 45.662 1.97e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu3g2382 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2382 - - gmx:100793751 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2382 3 75004129 75004872 Ssu3g2382 3 75004129 75004872 ECH