Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2380 ATGGCGACAGAGAGCACAGTAACTTCAAACCGTAGCAATGGAGAACGACCAAAGGTAGTAGTCATAACGGGCCCCACTGGTTCCGGTAAGTCGAAGCTTGCCGTTGATTTGGCCTCTCACTTCCCGGTCGAAGTCATCAACGCCGATTCTATGCAGGTCTACCGCGGCCTCGATGTTCTCACCAACAAACTCCCTCTCTCTCACCAAAACGGAGTGCCACATCATCTCTTGGGTACCATCAGTCCCAACGTGGAATTCACAGCTAAAGCGTTTCGGGATTCCGCTATTCCCaTTATTGATGACATTTTGGCACCCAACCACTTGCCTGTTATAGTTGGGGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTCTAGATGATTTTGCAGAAGATATGGATGAAAGCTGTTTGAGTGACCTACCTGgTGCCACACGGTCTGAGAACAGTTTCATTGCTGAAAATGATGGTTCAAACAATAGTTATGATCTGCTTAAGGATATGGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAGTTTGTACACTCGATCTGGTGTTCTTCCTAGCAAAATTTTTCAAGGAAAGGCAGCAGAGGGCAGAAGTGGGGTCAAGTTGATAACTTAA 660 0.447 MATESTVTSNRSNGERPKVVVITGPTGSGKSKLAVDLASHFPVEVINADSMQVYRGLDVLTNKLPLSHQNGVPHHLLGTISPNVEFTAKAFRDSAIPIIDDILAPNHLPVIVGGTNYYIQALVSPFLLDDFAEDMDESCLSDLPGATRSENSFIAENDGSNNSYDLLKDMDPVAANRIHPNNHRKINQYISLYTRSGVLPSKIFQGKAAEGRSGVKLIT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2380 219 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 203 - -
Ssu3g2380 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 120 IPR027417 -
Ssu3g2380 219 Pfam IPP transferase 52 207 - -
Ssu3g2380 219 Gene3D - 12 149 IPR027417 -
Ssu3g2380 219 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 203 IPR039657 -
Ssu3g2380 219 Gene3D - 150 207 - -
Ssu3g2380 219 TIGRFAM miaA: tRNA dimethylallyltransferase 19 209 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2380 Ssu-Chr3 74963483 74965560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2380 22 210 C2H2 Transcription Factor Family AT2G27760 63.731 2.69e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2380 K00791 - gmx:100792690 360.147