Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2376 ATGAACGTCATTAATTTACGATTTTGCCACTGTTCCCAACTCCTCCTCTCACCAACACCAAACCCCAATCTCCCTTTCTCGCAAACTGCAAAGCTAACTCTGAGAAACCCATCGACCCCTTCTGCCATTTCCTGCAAAAATAGTTTCTATTCTCCGATTCGCGCGTCCATGGCCTCGTCCTCTGTCACAGACACCGAAACAAAGCCATTTTCCGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCCGAAGGAGTCTTCACCGACTTGGTCAACAAAAGGGGCCTCAATTCCGACTTCAAAATCGATTCTGCTGGCACCATCGGTTACCACGAGGGAAATGAAGCGGACCCGAGAATGAGGGCAGCCTCGAAGAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAGCAGAACAGAGaGGACATATTGAAGGCCTTCAATAGATGGAAAGCTAGACATTCCTTACCGGATGATGCTCATAAAAAGGTTGAGTTGATGTGCTCGTATTGTAAGAAGCACGATGAAAGTGAAGTCCCAGATCCTTATTATGGTGGATCGCAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTGGCAACCATTTTGGCAGAAAACAAACCTGTACAGGAATCCTAA 717 0.4728 MNVINLRFCHCSQLLLSPTPNPNLPFSQTAKLTLRNPSTPSAISCKNSFYSPIRASMASSSVTDTETKPFSVLFVCLGNICRSPAAEGVFTDLVNKRGLNSDFKIDSAGTIGYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFVDFDLILAMDKQNREDILKAFNRWKARHSLPDDAHKKVELMCSYCKKHDESEVPDPYYGGSQGFEKVLDLLEDACGSLLATILAENKPVQES 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2376 238 Pfam Low molecular weight phosphotyrosine protein phosphatase 72 225 IPR023485 -
Ssu3g2376 238 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 7 233 - -
Ssu3g2376 238 SUPERFAMILY Phosphotyrosine protein phosphatases I 68 228 IPR036196 -
Ssu3g2376 238 CDD LMWPTP 71 226 - -
Ssu3g2376 238 Gene3D - 54 233 - -
Ssu3g2376 238 PRINTS LMW phosphotyrosine protein phosphatase signature 72 89 IPR017867 GO:0004725|GO:0006470
Ssu3g2376 238 PRINTS LMW phosphotyrosine protein phosphatase signature 115 131 IPR017867 GO:0004725|GO:0006470
Ssu3g2376 238 PRINTS LMW phosphotyrosine protein phosphatase signature 199 214 IPR017867 GO:0004725|GO:0006470
Ssu3g2376 238 SMART LMWPc_2 70 227 IPR023485 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2376 10 232 Protein tyrosine phosphatase (PTP) family AT3G44620 56.371 7.71e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2376 K25307 - gmx:100797254 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2376 3 74927376 74929400 Ssu3g2376 3 74927376 74929400 ECH