Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2375 ATGGAGACGGAGGATCTAACCGACGACCTCCACAGCCTAAGcttcgcctccaccaccaccaccaccaccgccgcAGACATCAAACGCAGCACAAGCTTCAGCTCCTCAACCACCACCGCCGTCACGCCCTCAACCTCTTCTCACTTCCACGCACCACTCCCCCACGCGCCCTCTTCCGAGCCCTGCTCCGCCTTCATCCTACGCACCCCACCCCTCTCCCTCTCCGACCTCCGCTTCACGCGCCGCCTCGGCTCAGGCGACATGAGCGCGGTGTACCTGGCGGAGCCCAAGGACGGCGGCGGCTGCGGCGCGTTGTTCGCGGCGAAGGTGATGGAGAAGGAGGACTTGGCGAGACGGAACAAGGAAGGGAGGGCGAGGACAGAGAGGGAAATTCTTGAAATGTTGGATCACCCATTCTTGCCCACGCTCTACGCGTCCATCCACGCGCCCAAGTGGCTCTGTTTCTTAACGCCCTTCTGCCCCGGCGGTGACTTGCACGTCCTCCGCCAGCGATTCCCCAACAAACGATTCCTCGAATCCGCCGTCAGGTTCTATGCGTCGGAAGTTTTGTTGGCTCTTGAATATCTACACATGTTGGGGGTAATCTACCGTGACCTCAAGCCTGAAAACGTGTTGATTCGATCAGACGGCCACATCATGCTCACTGACTTTGACCTCTCCTTAAAATGCGATGATTCCACATCAACGGCTCAAATCATCTCTGATCAAAACCCTCCTCCCACTGCCTCACATAACGATTCCCACGTTGAACCCGCTCGTGTTACCTCCTCTTCGTGCATAATACCCAACTGTATAGTCCCCACCGCGTCGTGCTTCCGCCCAAAACGCAAGCGAAAGAAGAAGCAAAGCCTGCGTAATGGGCCTGCGTTCGTGGCTGAGCCCGTTAACGTTCGGTCCATGTCATTCGTTGGGACCCACGAGTACTTGGCGCCTGAGATCGTGTCCGGGGAGGGCCACGGTAGTGCCGTGGACTGGTGGACTCTAGGGATATTTATGTTCGAACTGTTTTATGGGGTCACACCCTTCAAGGGCATGGACCACGAGCTAACCCTCGCAAACATTGTGGCTCGAGCCCTTGAGTTTCCGAAGGAACCCACTGCTTCAGCTGCCATGAAAGACCTTATCTCGCAGTTACTGGTTAAGGACCCGGCAAAGAGACTAGGGTCAGTGATGGGGGCTTCCGCGATCAAGCACCACTCGTTTTTTCAAGGCGTGAATTGGGCATTGCTAAGGTGTACAACTCCACCCTTTCTACCCCCACCTAATGGGAAAGCTGTATATGATGATCATGAAAGTTGTCCAGAGATTTTCATTGACTGTTATTAA 1347 0.539 METEDLTDDLHSLSFASTTTTTTAADIKRSTSFSSSTTTAVTPSTSSHFHAPLPHAPSSEPCSAFILRTPPLSLSDLRFTRRLGSGDMSAVYLAEPKDGGGCGALFAAKVMEKEDLARRNKEGRARTEREILEMLDHPFLPTLYASIHAPKWLCFLTPFCPGGDLHVLRQRFPNKRFLESAVRFYASEVLLALEYLHMLGVIYRDLKPENVLIRSDGHIMLTDFDLSLKCDDSTSTAQIISDQNPPPTASHNDSHVEPARVTSSSCIIPNCIVPTASCFRPKRKRKKKQSLRNGPAFVAEPVNVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFMFELFYGVTPFKGMDHELTLANIVARALEFPKEPTASAAMKDLISQLLVKDPAKRLGSVMGASAIKHHSFFQGVNWALLRCTTPPFLPPPNGKAVYDDHESCPEIFIDCY 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2375 448 ProSitePatterns Protein kinases ATP-binding region signature. 83 109 IPR017441 GO:0005524
Ssu3g2375 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Ssu3g2375 448 PANTHER FLIPPASE KINASE 1-RELATED 3 448 - -
Ssu3g2375 448 ProSiteProfiles Protein kinase domain profile. 77 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2375 448 SMART serkin_6 77 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2375 448 SUPERFAMILY Protein kinase-like (PK-like) 52 437 IPR011009 -
Ssu3g2375 448 PANTHER OS11G0150700 PROTEIN 3 448 - -
Ssu3g2375 448 MobiDBLite consensus disorder prediction 31 52 - -
Ssu3g2375 448 Gene3D Transferase(Phosphotransferase) domain 1 305 427 - -
Ssu3g2375 448 Gene3D Transferase(Phosphotransferase) domain 1 164 239 - -
Ssu3g2375 448 MobiDBLite consensus disorder prediction 31 55 - -
Ssu3g2375 448 Pfam Protein kinase domain 80 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2375 448 Pfam Protein kinase domain 306 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2375 448 Gene3D Phosphorylase Kinase; domain 1 76 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2375 Ssu-Chr3 74913873 74916849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2375 4 448 AGC Kinase Gene Family AT3G44610 65.208 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu3g2375 Pkinase 2.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2375 K08286 - gmx:100811470 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2375 3 74913873 74916849 Ssu3g2375 3 74913873 74916849 ECH