Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2374 ATGTGCGGCGATGGTCGGAGACGGGACCGGAGATACACCAGGGCATTGAAGAAGCGGAAGCTGAACCGCACCCCCGAGGAAGAGCTCGAGGCAAAATTTGGATTCGCTCTTTTCTCAGAGGGCGAAAAGAAACTCGGATGGTTACTCACTTTTGCATCCTCATCTGTTGAGGATGAAGACAGTTACAAAGTCTACAGTTGCGTTGATCTTTACTTTGTTACACAGGATGGTTCTTCATTCAAGTCAAAATTCAGATTTCGGCCATATTTCTATGCAGCTACTAAGgataaaatggAGAGGGATGTTGAAGCATACCTAAGACGACGTTTTGAAAGTCAGATTGCAGATATTGACATTGTAGAGAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTaagaaaatcttatttaaagctTTCATTTGATACCGTGCAACAATTGATGGATGTGAAGAGAGACCTGATgccttttgttgaaaaaaacaAGGCAAAGTCTGATGCTGCAGAAGCATTAAAGTCCATATCAACAGAAAGAAGAGAACATAAACCTCAAGATTTTCTAGATTGCATAACTGATCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAACGATATACGGTGTGGCCAGTGGTACGATGTTGGAGTGTCTAATAATGGCATTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTTCCTATGATTTAATTATGATGATTTCATACATGGTAGATGGTCAAGggtatttaatcataaatagagaGTGTGTCGGGGATGAAATTGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGGTAATGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTACGTGACGTATAATGGTGATTTCTTTGATTGGCCATTCCTGGAGCAAAGGGCAACCCATCTTGGTTTCAAAATGAGTGATGAATTGGGGTTTAAAAGCGATAAGAATCATGGTGAATGTCGTGCTAGATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGCTATCTCCCTCAGGGGAGCCAAGGCCTGAAGgCTGTTACAAAAGCAAAGTTGGGTTATGATCCATTGGAGGTGAACCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATccctttattttctctcttgcaACCATTATACCCATGTCACCAGATGATGTTTTGCGCAAAGGTAGTGGAACCCTCTGTGAAATGTTGCTTATGGTGCAGGCATACAATGCTAATGTTATCTGCCCTAACAAACACCAATCTGATCCAGAgaagttttataataatcatcttCTTGAGAGTGAGACGTACATTGGTGGTCATGTCGAATGTCTTGAAAGTGGTGTATTTAGATCTGATATTCCATCTAGTTTTACACTTGAGCCATCTGCCTATCAGCAACTGATCAACAACCTTGATCGAGATCTACAGTATGCTATAAGAGTGGAGGGTAAGGGTAAGATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGCGCCAATGCGTGAAGAATATCCCCTCATTTATCATCTGGATGTAGCTGCTATGTatccaaacataattttaacaaacagGCTTCAGCCATCATCAATTGTTACGGATGAAGTTTGCACTGCATGTGATTTTAATCGTCCCGGAAAGACTTGCCTACGCAAGCTTGAGTGGGCTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGcgaatataattgtttaaagaaACAGATTGAATCAGAGGATGTTAATGATTCTGAGaacaacaaagccttatcccactatTCTGAGAAGAGGTCATCAAAATCTTTTCTTGACCTTCCCAAGTCAGAGCAACAATCAAGACTGAAAGAGCGTTTAAAGAAATACTGTCAGAAGGTATATAAACGGGTACATGACAAACCAGTTACTAAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAACTGTCAAAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGATATGGTTGTGCTTTATGATTCATTACAACTTGCTCACAAGTGTATACTAAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTAGTGACGTATACTGGTGCAAAAATCATTCAGAATGCCCGCTTGCTAgtagagaaaataggaaaaccACTTGAACTAGACACGGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCagaaaatttcacttttaaaacaAAAGACTCAAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGgcaataaataatacaaatgatCAGTACCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCACAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCCGCTTCCAAGGAAGaaggaattttaattaagaagcgATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGAACCAAGGAAAGGATATTGCAGACAGTGAATTGCTTGATTATATATCAGAATCAAGTACAATGAGCAAATCTTTAGCTGATTATGGTGTGCAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTAGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGAACACCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCcgAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAAATGTTGGCGTTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCtgcaattcaaaaaattatctctATTCCTGCTGCAATGCAAaagGTTGCAAATCCCGTCCCCAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGGAAATTAGTTGATGCCTTTAAATCAATAAACAGGAATGAGCACTCAAAAAAGCAGAATGACTCAAATCGTGTCCATCTTCTGATGGATGATGAGATTGTTAATGAGTTGGAGGACTTTGGAAACAAGGGCAGGAGTTCTGCATGCAGACCTAGACCAATTATAGCGGCATTATGA 3558 0.3794 MCGDGRRRDRRYTRALKKRKLNRTPEEELEAKFGFALFSEGEKKLGWLLTFASSSVEDEDSYKVYSCVDLYFVTQDGSSFKSKFRFRPYFYAATKDKMERDVEAYLRRRFESQIADIDIVEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPFVEKNKAKSDAAEALKSISTERREHKPQDFLDCITDLREYDVPYHVRFAIDNDIRCGQWYDVGVSNNGITLEKRTDLLQRAEVRICAFDIETTKLPLKFPDASYDLIMMISYMVDGQGYLIINRECVGDEIEDIEYTPKPEFEGCFKVTNVQNEVMLLRLWFSHMQEVKPGIYVTYNGDFFDWPFLEQRATHLGFKMSDELGFKSDKNHGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDDVLRKGSGTLCEMLLMVQAYNANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYQQLINNLDRDLQYAIRVEGKGKMDLESVSNYDEVKNAIMEKLVKLRDAPMREEYPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPGKTCLRKLEWAWRGETFMAKKSEYNCLKKQIESEDVNDSENNKALSHYSEKRSSKSFLDLPKSEQQSRLKERLKKYCQKVYKRVHDKPVTKLREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSKAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQNQGKDIADSELLDYISESSTMSKSLADYGVQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSNVGVRSIVDWSYYKQRLSSAIQKIISIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDAFKSINRNEHSKKQNDSNRVHLLMDDEIVNELEDFGNKGRSSACRPRPIIAAL 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2374 1185 CDD POLBc_epsilon 503 1100 - -
Ssu3g2374 1185 SUPERFAMILY Ribonuclease H-like 66 467 IPR012337 -
Ssu3g2374 1185 Gene3D Palm domain of DNA polymerase 764 947 IPR023211 -
Ssu3g2374 1185 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 30 1169 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Ssu3g2374 1185 SUPERFAMILY DNA/RNA polymerases 486 1093 IPR043502 -
Ssu3g2374 1185 CDD DNA_polB_epsilon_exo 240 443 - -
Ssu3g2374 1185 Pfam DNA polymerase family B 763 969 IPR006134 GO:0000166|GO:0003677
Ssu3g2374 1185 Gene3D DNA Polymerase, chain B, domain 1 50 228 - -
Ssu3g2374 1185 SMART polmehr3 239 854 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ssu3g2374 1185 Gene3D - 238 468 IPR036397 GO:0003676
Ssu3g2374 1185 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2374 1 1181 Core DNA Replication Machinery Family AT1G08260 77.951 0.0 1956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2374 K02324 - gmx:100812003 2195.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2374 3 74848264 74907292 Ssu3g2374 3 74848264 74907292 ECH