Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2373 ATGAATGGTAAGGGGAGTCAGGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACAAAGTGCCACTGGCAGATAATACAGCTAGTTCCCAGTTCCcaaataggtcaattttttgCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTTTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCACCAATTACTGAAGAATTTATGGGTAAACGTGTCAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACCTGTATGAGGTCTCTattaatgaaattcaatatGAGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGAGTTTAAGGTAATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTGAGTGAATTACACATGAAGACCACAACAGAATGTGCTTATCTCAAACAATCTATAtccttcttttacttttaccatAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCGACTTTTCTTGAAAGACAATTTCATGATGCTTGCCAAGCCTTGTCTATTGAGCCACCTCAAAAGAATGGCAttaattttaagGTGGACTATGTTGCACATGTCAAGGATGCTGAAACAGTGATGCAAAGGGCAATAAACGGTCACAGTCATGGGAGAGAAAACCATGTGCCTATGGTTGCTGTCGTTGAATGCCCAAAtgttcaactagtaaaattggGCATTCGAGCTCTGGATGATTTTCCATGCCTGAGGATTCCTTATAATACACGTGATAGTCAGTAccagATTCTGGGATGGCAACAAGTTGCTGCTAAAATTGGAATGCAACGTTGTGCTGCATCTGTCCAATGGCTAAATAGGAGAATTGCTCTCTCAAGATATGCCCATGTACCGCTGGGTAACTTTGAACTTGACTGGCTTATATTTACAGCAGATATCTTCTTTTCAAGAGCGTTGCATGATAATCAACAGGTACTCTGGATATCTGATGATGGCCTTCCAGATTTAGGTAGCATTAATGGTGAACAGAACTGTTTTGTCGACGAGGTTCACCAACCTGTTCTTACGTATCCTGGAGCATATAGAAAAGTTACTGTGGAGCTTAAGATACACAACCTAGCTGTAAATGCTCTTCTCAAATACAACCTAGTTAATGAAATGGAAGGAGGCGCTCTATTTGGATTTGATCCTGAATTTGAATCTGGAGCATTTTCGATGAATGATCAAAATGGTTTTGACGAGTCTACTTCATGTGCACAAGCCTTTCGAGTCCTTAAACAGTTGATCCAGCGGTGCCTAGCGGATGCAGTTACATCAGGAAATGTTTATGCCGATGCGATATTGCAACATCTATATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTACACCAGCTACTCCACAagGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAATTTCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCTCAAAGATTATTATAGACACCGGGAAATATGATCTGTCTACAGCCAAAGCTTATTGTGACAGTTTGTTAAGAACTATACAATCTAGAGATTTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAATTATGGCGGAATACCAGCAAAATCTGATGAAGTCATGAATGATGAATCTCAAGTAGACATTATATCGAGCTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAAATGGTGACTTCTGTACCCCATCAATTAACATTGGAGCTGCAGAGGCTTTTGAATCAGAAATAACAGAATATATCAAAGGGCAGATTAGCTCTTACTTCACACACAAACTGCTAGGAATTGTTCACGATATTGGTCTTCATATGAAGGGGATGAGCAGATCAGAAAACAACCCGAGTATATCATTGGGCCTTCCTCAAATGGGTGATGTCCATAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTTTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGattttgaaaaagaatttgcTCAAATATGTTGATGTCAAGGAGTTTGCTCCAGAAGCTCAGTTTCATGATGCTTGTCATTCCTTCATCTTATCCAATGTCATCTGCagCTATTGTAATGACTGCAGAGACTTGGACTTGTGCCGTGACACTGCTTTATTAACTGAGGAGTGGCGTTGTGCGGTGCCACAGTGTGGCCAGCCTTATGACCGTGAAGTGATGGAAAATGCTCTTCTTCAGATTGTAAGACAGAGAGAACGGCTATACCACCTGCAAGATCTGGTTTGTCAAAGGTGCAATCAGGTGAAAGCTGCACATTTGGCCGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGATGCAAGTGAATTTTGCGGAAAGATGCAGCGGGTCTCTGTCAAGTGTGCTCTACTCGGTAGTCATAAGCTACAAGTGCCCCGGTATGAAGAAAAGGGTCCAAACCTGCTTGTGACCAACAGTTGTAAGGTTATTCAACCCTGTATGGTGTGCTTGTTTGACGCTGCTCTAAGCAATTCTTTTAGAGTAATGATTAATGGAAACATGTACAGTATATACATCTAA 2787 0.3979 MNGKGSQGRSHVSSYLKRLEVDLTKCHWQIIQLVPSSQIGQFFAWVVVDGSMHKIPVFVPRVFYLNSRSPITEEFMGKRVNKTLPHGRHSYNLYEVSINEIQYEEASKKLAALLADPDVEGIYETKVPLEFKVIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTTECAYLKQSISFFYFYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLSPTFLERQFHDACQALSIEPPQKNGINFKVDYVAHVKDAETVMQRAINGHSHGRENHVPMVAVVECPNVQLVKLGIRALDDFPCLRIPYNTRDSQYQILGWQQVAAKIGMQRCAASVQWLNRRIALSRYAHVPLGNFELDWLIFTADIFFSRALHDNQQVLWISDDGLPDLGSINGEQNCFVDEVHQPVLTYPGAYRKVTVELKIHNLAVNALLKYNLVNEMEGGALFGFDPEFESGAFSMNDQNGFDESTSCAQAFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEVMNDESQVDIISSWNIAEYLPKKIQNGDFCTPSINIGAAEAFESEITEYIKGQISSYFTHKLLGIVHDIGLHMKGMSRSENNPSISLGLPQMGDVHRGDAALEFIKHVCAVLALDQSVQHEVLILKKNLLKYVDVKEFAPEAQFHDACHSFILSNVICSYCNDCRDLDLCRDTALLTEEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCQRCNQVKAAHLAEQCACAGSFRCKEDASEFCGKMQRVSVKCALLGSHKLQVPRYEEKGPNLLVTNSCKVIQPCMVCLFDAALSNSFRVMINGNMYSIYI 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2373 928 Pfam Domain of unknown function (DUF1744) 238 605 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Ssu3g2373 928 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 6 867 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Ssu3g2373 928 SMART DUF1744_2 219 605 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2373 1 864 Core DNA Replication Machinery Family AT2G27120 55.986 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2373 K02324 - gmx:100778115 1570.44