Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2360 ATGTATAGCAATTTCAAAGAGCAAGCAATCGAGTACGTGAAGCAAGCGGTGCACGAAGACAATGAAGGCAACTACCCCAAAGCGTTCCAACTCTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTACGAGAAGAACCCCAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAGGAGATCCGGGCCGTCCTCGACGGGCCCGCAGGCCCGGCCTCCAACGGGGACGCAGCGGTCGCCACAAGGCCCAAGACGAAGCCCAAGGACGGCGGCGACGGAGACGGGGAGGACCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCCGCGATCGTTAGGGAAAAGCCCAACGTAAAGTGGAACGACGTCGCGGGGCTGGAGAGCGCGAAGCAGGCCCTGCAGGAGGCGGTTATCTTGCCCGTGAAGTTTCCTCAGTTCTTCACTGGTAAACGACGACCTTGGCGAGCGTTTTTGTTGTACGGACCACCGGGAACGGGTAAATCGTATTTGGCCAAGGCCGTTGCGACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCTTCTATCATATTCGTTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGGGAAGGGAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTTGATAAGCGTATATACATACCCCTACCAGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACTTGactgaaagtgattttgaacaTTTGGCTCGCAGGACAGAAGGGTTTTCAGGTTCAGATATATCTGTCTGTGTAAGTTTGACTTCTACATGGAATACCTGGTTACAgtcatcattttattttgatgagtTTCAAGCTAATGTAATTGGACCTATTCTACAGGTGAAGGATGTTTTATTTGAACCTGTTCGTAAAACCCAAGATGCcatgtttttctttaagaatCCTGAGGGTATGTGGATCCCATGTGGATCTAAGCAACAGGGTGCAGTACAAATTACAATGCAGGATCTTGCTGCCAAAGGTCTTGCTTCTAAGATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCTACAGTAAGCAAGGCTGACCTTAATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1389 0.4744 MYSNFKEQAIEYVKQAVHEDNEGNYPKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDGPAGPASNGDAAVATRPKTKPKDGGDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARRTEGFSGSDISVCVSLTSTWNTWLQSSFYFDEFQANVIGPILQVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGSKQQGAVQITMQDLAAKGLASKILPPPISRTDFDKVLARQRPTVSKADLNVHERFTKEFGEEG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2360 462 Pfam Vps4 C terminal oligomerisation domain 395 459 IPR015415 -
Ssu3g2360 462 Gene3D - 370 442 - -
Ssu3g2360 462 Gene3D - 297 341 - -
Ssu3g2360 462 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Ssu3g2360 462 PANTHER AAA DOMAIN-CONTAINING 1 341 - -
Ssu3g2360 462 ProSitePatterns AAA-protein family signature. 267 286 IPR003960 GO:0005524|GO:0016887
Ssu3g2360 462 SMART smart 2 79 IPR007330 -
Ssu3g2360 462 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 369 462 - -
Ssu3g2360 462 MobiDBLite consensus disorder prediction 90 108 - -
Ssu3g2360 462 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 341 - -
Ssu3g2360 462 Gene3D - 124 296 IPR027417 -
Ssu3g2360 462 CDD AAA 132 295 - -
Ssu3g2360 462 Pfam ATPase family associated with various cellular activities (AAA) 166 295 IPR003959 GO:0005524|GO:0016887
Ssu3g2360 462 SMART AAA_5 161 297 IPR003593 -
Ssu3g2360 462 CDD MIT_VPS4 4 74 IPR045253 -
Ssu3g2360 462 Gene3D - 6 74 - -
Ssu3g2360 462 PANTHER AAA DOMAIN-CONTAINING 369 462 - -
Ssu3g2360 462 MobiDBLite consensus disorder prediction 74 108 - -
Ssu3g2360 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 343 IPR027417 -
Ssu3g2360 462 SUPERFAMILY MIT domain 2 75 IPR036181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2360 Ssu-Chr3 74562611 74566455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2360 160 340 Calmodulin-binding Proteins AT3G56690 38.043 3.78e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2360 K12196 - gmx:100791614 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2360 3 74562611 74566455 Ssu3g2360 3 74562611 74566455 ECH
Ssu8g0677 8 11149795 11156895 Ssu3g2360 3 74562611 74566455 ECH
Ssu8g0677 8 11149795 11156895 Ssu3g2360 3 74562611 74566455 PCT