Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2354 ATGGGTTTGATGGACTGCAATGTAGAGGACAATAAGAATCTATACCTTCATGCCCCAACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATATCCAAATTCCCATACAATATCATCATcaccatcttcttcttcttcttcttttactcAGAACGAGTTTGTTCAGGAAACTATCCAATTCTTGCCCATTTTAAGTGAAAAGGCCTCAAAAGATGAAGATCATGGAGTACAAAAGGAGGGGTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTGACACTAAAGGGCATCCTGAGGTTGATGAGAAGATGATTTTCCATGTTAAGGAAGAAGTAGAGCCCTCAAAGAGAAGCTTCCATGGATGCTCTTTCAACCAAGAGAGAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTCAAAGGAACACAACCAGCTGCAATGTTAAGGTTACCATGCTACTGCTGTGCCCAGGGTTGCAAGAACAACATCAATCACCCAAGGGCCAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAAAGAAAGCACGGGACAAAGCCATTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCCCTCAAGGATCATATTAGATCCTTTGGAAAGGGACATAACCCACTTCCTCCCTTTGAAGCTTATGAGGATGAGAAGGAATGCATTACTGGGTCTGATGAAGATGAACTTAATGCTCATCATACATGA 960 0.4177 MGLMDCNVEDNKNLYLHAPTFIEWLKPCSSPSYPNSHTISSSPSSSSSSFTQNEFVQETIQFLPILSEKASKDEDHGVQKEGFEVKEEKVEQVTVALHIGLPDTKGHPEVDEKMIFHVKEEVEPSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPLPPFEAYEDEKECITGSDEDELNAHHT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2354 319 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 316 - -
Ssu3g2354 319 Gene3D Classic Zinc Finger 154 177 - -
Ssu3g2354 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 259 IPR013087 -
Ssu3g2354 319 PANTHER ZINC FINGER PROTEIN WIP2 1 316 IPR043584 GO:0003700|GO:0010468
Ssu3g2354 319 Gene3D Classic Zinc Finger 235 292 - -
Ssu3g2354 319 Pfam Zinc finger, C2H2 type 155 174 IPR013087 -
Ssu3g2354 319 SUPERFAMILY beta-beta-alpha zinc fingers 146 178 IPR036236 -
Ssu3g2354 319 SUPERFAMILY beta-beta-alpha zinc fingers 225 259 IPR036236 -
Ssu3g2354 319 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Ssu3g2354 319 SMART c2h2final6 155 177 IPR013087 -
Ssu3g2354 319 SMART c2h2final6 239 259 IPR013087 -
Ssu3g2354 319 SMART c2h2final6 202 234 IPR013087 -
Ssu3g2354 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2354 Ssu-Chr3 74507567 74510646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2354 7 307 C2H2 Transcription Factor Family AT1G08290 54.810 1.90e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g2354 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2354 - - gmx:100802773 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2354 3 74507567 74510646 Ssu3g2354 3 74507567 74510646 ECH
Ssu8g0679 8 11203234 11206446 Ssu3g2354 3 74507567 74510646 PCT