Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2351 ATGGCGAGCCAAAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGACCTTCAAGTCACCATGTCTCTTATGGAGTTCTTCATGGGATTAATACCCCAGCATCAGGCCTAATCAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGCTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAACTGAGCTCCAGTTTGAAACAGAATCTCCCATAAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCACCTTcaacagcagcagcagcaacaacaacaggAGACAGCAACTGATGCCTCAAGAACAGGAACATCTCAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAAGGAGCTGGTTCCACATCAGAGAAGCAACTTGATGCAAAGGCACTTAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTACAGCAACTAGAGTCTAGTAGATTAAAGCTCAGCCACCTTGAACAAGACCTTCATAGAGCTCGCTCTCAGgGACTGTTTATGGGTTGTGGTGGTGCTGGTGGCAATATAAGCTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGTTAGAAGATGACCACCGGCACATGGCAGAGCTCCAGACCGGCCTGCAGCTGTCGGACGGCGAACTAAGAGTGATTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTGAAAGGGTTGGCAGCTAAAACAGATGTGTTTCACCTTATTAATGGCATGTGGACTTCCCCAGCTGAGAGATGCTTCCTCTGGATAGGGGGTTTCAAACCATCAGAGCTCATCACAATGTTGATACAACAGTTGGACCCCCTAGCGGAGCAGCAATATATGGGCATATATGGGCTCCGGCATTCGTCACTGCAAACAGAAGAGGCTCTAACTCAAGGTCTTGAACAACTTCAGCAGTCTCTAGTTGACACCATCGCCGGCGGCCCTGTCGTCGACGGTGTGCAACAGATGGTGGCAGCCATGGGCAAGCTTGCAAACCTTGAAGGTTTTGTTGCTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTACTGACAGTTCGTCAAGCAGCACGGTGTTGTCTTGTGATTGGAGAGTATTATGGTCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAGCGATGATAACTCATGCCAAACAAGCACGGAATTGCAAATGGTTCAACCTTCTCAGAATCATTTCTCGAGTTTCTGA 1473 0.4569 MASQRIGETGLSESGPSSHHVSYGVLHGINTPASGLINQGSAFDFGELEEAIALQGIKIRNDEAKASLFTGRPSATLEMFPSWPMRFQQTPRGGSKSGGESTDSGSGVNTLSSKTELQFETESPISIKASSSDHHQAFDQHLQQQQQQQQQETATDASRTGTSQNQSAAKSPQEKRKGAGSTSEKQLDAKALRRLAQNREAARKSRLRKKAYVQQLESSRLKLSHLEQDLHRARSQGLFMGCGGAGGNISSGAAMFDMEYARWLEDDHRHMAELQTGLQLSDGELRVIVDGYLSHYDEVFRLKGLAAKTDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIQQLDPLAEQQYMGIYGLRHSSLQTEEALTQGLEQLQQSLVDTIAGGPVVDGVQQMVAAMGKLANLEGFVAQADNLRQQTLHQLCRLLTVRQAARCCLVIGEYYGRLRALSSLWASRPRETLISDDNSCQTSTELQMVQPSQNHFSSF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2351 490 PANTHER TRANSCRIPTION FACTOR TGA9 64 469 - -
Ssu3g2351 490 PANTHER TRANSCRIPTION FACTOR TGA9 64 469 - -
Ssu3g2351 490 Gene3D - 189 237 - -
Ssu3g2351 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700|GO:0006355
Ssu3g2351 490 Coils Coil 209 236 - -
Ssu3g2351 490 ProSiteProfiles DOG1 domain profile. 253 459 IPR025422 GO:0006351|GO:0043565
Ssu3g2351 490 Pfam bZIP transcription factor 189 230 IPR004827 GO:0003700|GO:0006355
Ssu3g2351 490 Pfam Seed dormancy control 270 343 IPR025422 GO:0006351|GO:0043565
Ssu3g2351 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Ssu3g2351 490 SMART brlzneu 186 262 IPR004827 GO:0003700|GO:0006355
Ssu3g2351 490 MobiDBLite consensus disorder prediction 80 189 - -
Ssu3g2351 490 SUPERFAMILY Leucine zipper domain 190 232 IPR046347 GO:0003700|GO:0006355
Ssu3g2351 490 MobiDBLite consensus disorder prediction 88 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2351 Ssu-Chr3 74396402 74403958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2351 131 490 bZIP Transcription Factor Family AT1G08320 68.033 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu3g2351 DOG1 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2351 K14431 - gmx:100101904 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2351 3 74396402 74403958 Ssu3g2351 3 74396402 74403958 ECH