Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2347 ATGCCAATCCCTTCTGAGAGGCATATGTTTCTTCAAACGGGAAATGGGTCTGATGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAATCTGTGCAGCGGTTAGGTGGAGCTGACAAGGCAACTCCTAAAACGGTAATGAAACTCATGGGAATTCCAGGGCTTACCTTATATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGCAACAGTGCGACACACAAAATCACCATAAATCCAGGTGCAGCAACAGATGAAAGACTCAGAGAAAACAACGGAACTCATATGAACAATTTAAACCTTGCCCCTCAGTCTAACAATAAAGATTTACACATAAGTGAGGCACTGCAGATGCAAATAGAGGTGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTCCTGCAGCTCCGGATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGCTGGAGAAAGCTCAGGAAACACTTGGTGGACAGAATTTGGGAGTAGTAGGACTTGAAGCTGCTAAACTTCAACTCTCGGAGCTAGTGTCCAAAGTGTCCTCTCAGTGCCTGAATTCAGCATTTTCAGAGCTGAAGGAGTTACAAGGATTTGGCCCTCACCAAACACAAACCAACCAGCCAAATGACTGTTCTATGGACAGTTGTCTCACATCCTGTGAGGGATCACAAAAAGAGCAAGAGATACAAAATGGGGGGATGAGCTTAAGACCCTTCAATGTCCACACATTCATTGAAAGAAAGGAAGTCATGGAGGGTCCCAATCTTAACCTACCAAACACTGACCTCAAGTGGTGTGATCCAGTGACGAAGAACACCTTCCTTACCCTATTGAGCAAGCATGCAGAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCAACATGTTTTCTGAGAAAACAATGGTCGGTGAATTCCAACAAAGAAACACCATTAGGACAGAATCAGTGAAACCATTGGCTGAGAAAGTTTCTCAAGATTATGGAATGTCTTCTTACTTTGCAGCATCGAAACTGGACCTGACCACTGAAGATAGAGACACTACAACGAGTTGTAAACAACTGGACTTGAATGCATTCAGTTGGAACTGA 1191 0.4366 MPIPSERHMFLQTGNGSDDSGLVLSTDAKPRLKWTPDLHARFIESVQRLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKSLHGQSNSATHKITINPGAATDERLRENNGTHMNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGGQNLGVVGLEAAKLQLSELVSKVSSQCLNSAFSELKELQGFGPHQTQTNQPNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFIERKEVMEGPNLNLPNTDLKWCDPVTKNTFLTLLSKHAERSPSNLSMSIGLEGETENGSNMFSEKTMVGEFQQRNTIRTESVKPLAEKVSQDYGMSSYFAASKLDLTTEDRDTTTSCKQLDLNAFSWN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2347 396 Pfam MYB-CC type transfactor, LHEQLE motif 133 179 IPR025756 -
Ssu3g2347 396 PANTHER MYB-RELATED PROTEIN 2 1 396 - -
Ssu3g2347 396 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Ssu3g2347 396 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 29 84 IPR006447 GO:0003677
Ssu3g2347 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 86 IPR017930 -
Ssu3g2347 396 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 396 IPR044848 GO:0003700
Ssu3g2347 396 Gene3D - 28 86 - -
Ssu3g2347 396 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Ssu3g2347 396 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2347 Ssu-Chr3 74346498 74348991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2347 61 396 G2-like Transcription Factor Family AT3G04030 49.425 2.49e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu3g2347 Myb_DNA-binding 9.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2347 - - gmx:100805237 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0688 8 11322603 11326509 Ssu3g2347 3 74346498 74348991 PCT