Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2344 ATGGCGGAGGCGGAGGAGCTGCCCCGGTCTATCGTGCGCCGCGTGGTGAAGGATAAGCTGTCCCGTTGCTCCGAAGACGGAGACATTTCCGTCAGCAAAGACGGTCTTCTCGCATTCTCCGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCCACGGCTAATGATATATGTAAGGAGTCAAAGAGGCAGATTATCACTGCTGAGGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTTCCTGAGTTTGTTCGCCCTCTAAAGGCTTCACTTGAAGAGTTTAGGAAGAAGAATGCTGGAAAGAAAGCGGCAGTGTCAAAGGGAAAGGAAGATgaggggaaaaagaaaaggaagttgGAAGGTGAGTCGACTGATAAACGTGAGGGTTCTGATAAAGATGAGGAGGTTCTGATAAAGGTGAGGGTTCTGATAAAGGTGAGGGTGGTGACGACCAATGATTCAATTCCATGA 471 0.4628 MAEAEELPRSIVRRVVKDKLSRCSEDGDISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIITAEDVFKALEETEFPEFVRPLKASLEEFRKKNAGKKAAVSKGKEDEGKKKRKLEGESTDKREGSDKDEEVLIKVRVLIKVRVVTTNDSIP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2344 156 Coils Coil 58 78 - -
Ssu3g2344 156 SUPERFAMILY Histone-fold 7 120 IPR009072 GO:0046982
Ssu3g2344 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Ssu3g2344 156 MobiDBLite consensus disorder prediction 98 132 - -
Ssu3g2344 156 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 2 135 - -
Ssu3g2344 156 Gene3D Histone, subunit A 1 137 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2344 7 95 CCAAT-HAP3 Transcription Factor Family AT5G47640 31.461 7.98e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu3g2344 CBFD_NFYB_HMF 1.1e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2344 K02326 - gmx:100306382 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2344 3 74306228 74308227 Ssu3g2344 3 74306228 74308227 ECH