Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2343 ATGAAGGGAAAGGATTCTTCCGAAAACAAGGGCTTTGGTTTTGTGACCTTTAGAAATGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTGAATAATGCAGAATTTAAGggtaaaaaaataaaatgttcgACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGAGGAAGATTTGAGGAAGGTCGTAACTCAGATTGGACCTGGAGTTACTGGTGTGGAACTAGTCAAGGATATGAAGAACACCAAAAATAACCGTGGCTTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAGTATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGATGACAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCCTCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCGAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGCCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCAATGAAAGCGCTGAAAAACACTGAAAGATATGAATTAGACGGTCAAATTTTAGAGTGCTCTCTGGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACACACAGAAGCCAGGACCAGGATTGCTTCCAAGCTATCCACCACATGTTGGTTATGGTTTGGTTGGGGGTGGTGCCTATGGTGCACTTGGTGCAGGATATGCTGCTCCAGGTCTCGCACAGCCCTTGCTATATGGAGGAGGTCAAACTCCCCCTGGAATGGCCATGATGCCTATGCTTTTGGCTGATGGACGGATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCCCCACCCTCGAATCATAGAGGTGGCAGGAGTGGTGGCGGTGGGAGTGGCAACAGGAATGCTGGCAGTTCCAGTAAGGGAAGgcacaacaatgatggtggccAAGGGCGCAGATACCGCCCATATTAG 1053 0.4444 MKGKDSSENKGFGFVTFRNVELASKAIEELNNAEFKGKKIKCSTSQAKHRLFIGNVPRSWGEEDLRKVVTQIGPGVTGVELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSPTFKLDDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQILECSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGYGLVGGGAYGALGAGYAAPGLAQPLLYGGGQTPPGMAMMPMLLADGRIGYVLQQPGMQPQAPPSNHRGGRSGGGGSGNRNAGSSSKGRHNNDGGQGRRYRPY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2343 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Ssu3g2343 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Ssu3g2343 350 PANTHER RNA RECOGNITION MOTIF 1 320 - -
Ssu3g2343 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 131 IPR000504 GO:0003723
Ssu3g2343 350 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 320 - -
Ssu3g2343 350 MobiDBLite consensus disorder prediction 223 237 - -
Ssu3g2343 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 112 IPR000504 GO:0003723
Ssu3g2343 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 41 IPR000504 GO:0003723
Ssu3g2343 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 212 IPR000504 GO:0003723
Ssu3g2343 350 Gene3D - 132 239 IPR012677 -
Ssu3g2343 350 MobiDBLite consensus disorder prediction 302 350 - -
Ssu3g2343 350 SUPERFAMILY RNA-binding domain, RBD 49 223 IPR035979 GO:0003676
Ssu3g2343 350 CDD RRM_SF 1 43 - -
Ssu3g2343 350 MobiDBLite consensus disorder prediction 324 338 - -
Ssu3g2343 350 SUPERFAMILY RNA-binding domain, RBD 2 48 IPR035979 GO:0003676
Ssu3g2343 350 MobiDBLite consensus disorder prediction 220 241 - -
Ssu3g2343 350 Gene3D - 50 130 IPR012677 -
Ssu3g2343 350 Gene3D - 1 49 IPR012677 -
Ssu3g2343 350 SMART rrm1_1 144 217 IPR000504 GO:0003723
Ssu3g2343 350 SMART rrm1_1 50 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2343 Ssu-Chr3 74300085 74304724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2343 8 323 Eukaryotic Initiation Factors Gene Family AT2G23350 25.852 2.28e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2343 K13161 - gmx:100806658 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2343 3 74300085 74304724 Ssu3g2343 3 74300085 74304724 ECH