Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2333 ATGGAAGATCATCCACCCGGGTTTCGTTTCTTCCCAACAGAAGAAGAGCTAGTTGGCTTCTACCTACACAACAAGCTAGAAGGCCAAAGAAATGCCATAGATAGAGTTATCCCAGTTATTGACATCAATGGCGTTGAGCCGTGGAACCTTCCAACACTTGCTGGGGAGCTTTGTCGTGGGGACACGGAACAATGGTTTTTCTTTTCGCCCGGTCAAGAGAGGGAAGCCAGGGGAGGCAGACCCAGCAGAACCACAGCTTGTGGGTATTGGAAGGCCACGGGTTCTCCTGGCTACGTTTACTCTTCTGACAACAAAGTCATTGGGGTGAAGAAATCCATGGTTTTCTACAAAGGAAAAGCCCCTACGGGAAGGAAAACCAAATGGAAGATGAACGAGTACAGAGCCATCCAAGTCTCTAACCAATCCACCCCTCagTTGAGATGGGAATTCAGCTTGTGTCGGGTATATGTAATATCGGGAAGCTTTCGAGCATTTGATCGACGCCCATTAGAGAGGGAAGCAATACTAGAGTCGCGAGTTCATAGCATTGAGAACAGAATTGGTGTGGCATGTGCTCAGCAAACTGCAAAAGTGGTTGGATCGAGTTCATCTGAAACTTCCCACTTAGGGGGACTCCATGGCGCTCAGCTGCTAGAGGCTGGAGACTCGAGCAGCGCAAATTGgattgtaaatattaataatgaggTCCAACTTCAAGAACCGCTATGGGAATTGGAATGGGAACAATTTAATTGCCTCTGA 762 0.4685 MEDHPPGFRFFPTEEELVGFYLHNKLEGQRNAIDRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKATGSPGYVYSSDNKVIGVKKSMVFYKGKAPTGRKTKWKMNEYRAIQVSNQSTPQLRWEFSLCRVYVISGSFRAFDRRPLEREAILESRVHSIENRIGVACAQQTAKVVGSSSSETSHLGGLHGAQLLEAGDSSSANWIVNINNEVQLQEPLWELEWEQFNCL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2333 253 ProSiteProfiles NAC domain profile. 4 158 IPR003441 GO:0003677|GO:0006355
Ssu3g2333 253 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 251 - -
Ssu3g2333 253 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Ssu3g2333 253 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Ssu3g2333 253 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 251 - -
Ssu3g2333 253 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2333 Ssu-Chr3 74135484 74136739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2333 7 251 NAC Transcription Factor Family AT3G44350 54.472 2.79e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g2333 NAM 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2333 - - gmx:100781321 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2333 3 74135484 74136739 Ssu3g2333 3 74135484 74136739 ECH
Ssu8g0700 8 11481052 11482216 Ssu3g2333 3 74135484 74136739 PCT