Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2315 ATGATCACACAATACAATAAcagtaacaataacaacaacaacaacaataacaacaacaacgcTGTACTCAAGCGAAGCCCCCTCGTGGATAGCGTGGCTATCGAGAAGGACTCTTCAAACCCATATAACGATTTCCGGCACTCCATGCTCCAAATGATCTTCGAGAAGGAGATCGAGTCAGAGGACGATCTTCAAGATCTTCTGCAATGCTTTCTTCACCTCAATGCGCCATGTCACCACCACGTCATTGTTAAGGCCTTCAATGAGATCTGCGAAGAAGCGTTTCCTCACAAGATTGTTGTGCTCACACAATTGTATTGCTCTATGGCAATGGATGCTTTGCTAGCTAGCTAA 354 0.4011 MITQYNNSNNNNNNNNNNNNAVLKRSPLVDSVAIEKDSSNPYNDFRHSMLQMIFEKEIESEDDLQDLLQCFLHLNAPCHHHVIVKAFNEICEEAFPHKIVVLTQLYCSMAMDALLAS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2315 117 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 32 91 IPR006458 -
Ssu3g2315 117 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g2315 117 ProSiteProfiles OVATE domain profile. 34 93 IPR006458 -
Ssu3g2315 117 PANTHER TRANSCRIPTION REPRESSOR OFP10 8 99 - -
Ssu3g2315 117 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 8 99 IPR038933 GO:0045892
Ssu3g2315 117 Pfam Transcriptional repressor, ovate 38 93 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2315 Ssu-Chr3 73767676 73768404 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu3g2315 Ovate 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2315 - - ccaj:109799084 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2315 3 73767676 73768404 Ssu3g2315 3 73767676 73768404 ECH
Ssu8g0715 8 11710327 11710881 Ssu3g2315 3 73767676 73768404 PCT