Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2313 ATGTCGGCCTCGCGCGCTCCACCccccgccgccgccgccgcctcCGCCAAATCGCCGGAGCAGATCATGCACTCCATGAAGCGCCAACTCCCCTTCTCCGGCATGAAGCCGCCCTTCGTCGCCGCCGGAGACTACCACCGCTTCGCCCCCGACCACCGCCGGAGCCTCGAGCAGGAGGCCGAGGCCATCGTCGTCAAGACTCCCCAGCTGAAGCGGAAGAGTGAAGCGGCTGATTTTGAGGCTGATTCTGGTGATAGGATGACTCCTGCTTCCACTGAAGCAGCTAATAGTCCTTTTCAGACACCTGTATCAGGAAAGATGGGGAAGGGAGGCAAATCCTCTAGGCTGACAAAATGCAACAGACCTGGAACTCAAACCCCGGGCTCAAATATTGGTTCTCCAGGCAATAATCTCACACCTGCTGGTCCATGTCGATATGACAGCTCTTTAGgtCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCTGACACGTTAGagGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTAAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTCGAAAATTTAACAATGGAGGAGCGCCGGTTGGATGACCAAATAAGGGAGATGCAAGAAAGACTGCGGGATCTTAGTGAAGATGAAAACAATGAgaaGTTGCTTTTCGTTACTGAGGAAGATATAAAGAATCTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGCACCACTTTGGAGGTCCCGGATCCTGATGAGGCTGTTGATTATCCGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGtcaatttgaagaaaagtttGAAGAGATTAATGGTGTTGATGTTGCACCCAAACTTCCATCGAGTCCAGATGTTAACAAGCATCAATCAACAGTGGTCCCAGAGGATAGAGGGAAGGACATAGAAGTGCAGGAACAAGAAGTTCACGGACCTAGTTCAGATTTTACTAACTCTCAGGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGATCCGCTTCAAGAAGATTATTGTATGACTCACGAGAACACCACGACCCCAAGTCATCCTTCAAATGTAGGGGAAGTGTCTTCTGCATCTAAACCTACTGGAGGTTGA 1395 0.4573 MSASRAPPPAAAAASAKSPEQIMHSMKRQLPFSGMKPPFVAAGDYHRFAPDHRRSLEQEAEAIVVKTPQLKRKSEAADFEADSGDRMTPASTEAANSPFQTPVSGKMGKGGKSSRLTKCNRPGTQTPGSNIGSPGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMEERRLDDQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKLPSSPDVNKHQSTVVPEDRGKDIEVQEQEVHGPSSDFTNSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCMTHENTTTPSHPSNVGEVSSASKPTGG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2313 464 MobiDBLite consensus disorder prediction 89 103 - -
Ssu3g2313 464 SUPERFAMILY E2F-DP heterodimerization region 224 327 IPR037241 -
Ssu3g2313 464 MobiDBLite consensus disorder prediction 441 464 - -
Ssu3g2313 464 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667|GO:0006355
Ssu3g2313 464 CDD E2F_DD 221 327 IPR032198 GO:0046983
Ssu3g2313 464 PANTHER TRANSCRIPTION FACTOR E2FB 23 455 - -
Ssu3g2313 464 Gene3D - 139 212 IPR036388 -
Ssu3g2313 464 MobiDBLite consensus disorder prediction 1 24 - -
Ssu3g2313 464 MobiDBLite consensus disorder prediction 117 137 - -
Ssu3g2313 464 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667|GO:0006355
Ssu3g2313 464 MobiDBLite consensus disorder prediction 73 140 - -
Ssu3g2313 464 Coils Coil 223 264 - -
Ssu3g2313 464 PANTHER TRANSCRIPTION FACTOR E2F 23 455 IPR015633 GO:0000978|GO:0006357
Ssu3g2313 464 Gene3D - 217 327 - -
Ssu3g2313 464 Coils Coil 161 181 - -
Ssu3g2313 464 SUPERFAMILY "Winged helix" DNA-binding domain 145 208 IPR036390 -
Ssu3g2313 464 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2313 Ssu-Chr3 73748172 73753845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2313 15 463 E2F-DP Transcription Factor Family AT5G22220 57.025 1.49e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ssu3g2313 E2F_CC-MB 7.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2313 K06620 - gmx:100819817 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2313 3 73748172 73753845 Ssu3g2313 3 73748172 73753845 ECH