Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2306 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCAAGACAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGctgaattgatgaaaaaattaaatggtgCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTAGAATACCTGCATTCGAATTTTGTTTTACATCGTGACCTAAAGTGTTCCAACATATTTCTTACCAAGGATCAGGATGTTCGCCTAGGTGATTTTGGGCTTGCCAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACACCTAATTACATGTGTCCTGAACTGCTTGCTGATATTCCATATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATACGAGATGGCTGCTCATCGGCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTCTGCCTTCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAGCCTTATGTGGATCAATATCGTCCATCTTTCAGTCCTCCAACAGCATGTTCTCCTGAAAAACCAATTTCTGCTGTCAACGATCCTCGAAAAAATATGGCTGAAAGTCAAAACAGCAATAGTTCAAGTAGTGACAAAGATAGTTTAATGTCAACTGAGAAAAATATTGCAACAGCAGTACCAAAGTGTGATAACAAAGTCACTGAGTCGGATCTAACGTCAATGGATGATGATGGCTCAGACGAAGAAAGTGGCTCTAGTAATGCCAATGCCAATGCCAAAACAGCTGAGCAAGAGGTGATGAAACCATCTCATAATGAACACCATTCTAAAGTTGAATCCAAGCAGCCAAAAACAATTAGAAATATAATGATGGCACTGAAAGAAGGAAAGGGTAGAGAAGCAACTTCCCCAATGAGAGGCAACCGCATAAAGGCTGGTGGTGTATCAACACCGAAAATAAGCACAGAGACATTGTCTAAATTGcctaaacctaatttttttGCTCCTAGTGTGAAGCCTAATTTAGAGTCACCAACTGTTGCACTTGCAAGGGCAACCCCTGACTCTGCAAAAAGAATGCAGGGATCACATCATTCAAAGCATCAGTTACTTATGGCAGAAGCCTCACCGAAAGTTAAACCTAGACATGATTTGACTCCACCATCCGGGCTTGTCAAACAAGTagaaggagatggagttcctcCCAAGCCAAGACAAAGGACTCCCCCAAGCTTACTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCCGGTCTTGATGTTCCAAATGCAGCAAATGATACTGGGAAGGTAGGCACAAATAAAATAGTCCTGGAACCTGAGATGAGCCATTGTCAGTTGGCCAATGGCAATGTACCACATATTTCTAGACAGGTTACTAGAGAGCCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGCCTCATCTTCAGTTTCTATCCAAGCATGTGAACTTGCTGATGATGCAACAACTTTTATTGACATGAGAGAACAGATGCTTCCTGATCATGAGAATGTAAACCACATTGTAGGTGTGGAATCATGTCCTGACAGAAGCCCACCTACAACTTGTGCACACTGTAAGATGGTTGAAAAAGTGCCTAAAGAAACTTGTGGGCGTACTCTGAATTTTCAGAATACTATTAGTAGTAATGAGAAAGTGAGTTCTAGTTTAACTCAAGATCACCATGTTGAAGATTCTAAGGGAACACGTGCTTCGGAAGGTGGTCTTCTCATAAACCAGACAACTATATCTACTACCTCCGGCTGTGATAATATATCTGTAGAACCCTCTGCTGGATCCACCAAAGAAATCAAAGATTTTCAAGATATTTCCAAGGAAATGCCTTTAACCAAGTCTCCCAAACATGCACCCCCAAGTTCTGGAGAAAAGTCTGTTCATGTAGAAGTTAGTCCAGTAAGTGAGCCTGATATAGTTAGCCAGCCAGCACTTGGATGTAAGTCAACTGGTGATGACAAATTCACAGTGAGGGAGCGGCTGTCACCTGTGGCTGAAACTGTTCCTTTGGTTACCAGTACTAAATTATCAAGCCAGAAAGTTTTGCAAGAGAAAGGAACAAGTGTGTTGCAGAATCCAGCACCAGAAAGGCCTGATACTGGCCATCTTCCTCCAGCCTTTGATGATGTTATCCATGTCATACGCCATAGTAGTTACCGCGTTGGAAGTGAGCAGCCAGTAAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGCAAGTTTATCAATGCTGTGAGGGATGATTTAGAAATGAGGAACATAACCTCACCTTTGACCCTCAAATCTTCAAGTTGCTCTGATGTTACAAGcttgaaatcaaatatttctGATCAGTTGGAAATGAAGAACTTGAACACTCCTCCCATCCTTAAATCTTCAAGTTTCTCCGATGCTTCGAGCTTGAAGTCAAGCATTTCTGATCATCCTGGCCTCAAGGAACAAGATGTGAGTAACCCTCCTTCTTAG 2826 0.4144 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPSCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPSFSPPTACSPEKPISAVNDPRKNMAESQNSNSSSSDKDSLMSTEKNIATAVPKCDNKVTESDLTSMDDDGSDEESGSSNANANAKTAEQEVMKPSHNEHHSKVESKQPKTIRNIMMALKEGKGREATSPMRGNRIKAGGVSTPKISTETLSKLPKPNFFAPSVKPNLESPTVALARATPDSAKRMQGSHHSKHQLLMAEASPKVKPRHDLTPPSGLVKQVEGDGVPPKPRQRTPPSLLRRPSFSGRMRLAGLDVPNAANDTGKVGTNKIVLEPEMSHCQLANGNVPHISRQVTREPQKAFERSSKGMQTDSSNSASSSVSIQACELADDATTFIDMREQMLPDHENVNHIVGVESCPDRSPPTTCAHCKMVEKVPKETCGRTLNFQNTISSNEKVSSSLTQDHHVEDSKGTRASEGGLLINQTTISTTSGCDNISVEPSAGSTKEIKDFQDISKEMPLTKSPKHAPPSSGEKSVHVEVSPVSEPDIVSQPALGCKSTGDDKFTVRERLSPVAETVPLVTSTKLSSQKVLQEKGTSVLQNPAPERPDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINAVRDDLEMRNITSPLTLKSSSCSDVTSLKSNISDQLEMKNLNTPPILKSSSFSDASSLKSSISDHPGLKEQDVSNPPS 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2306 941 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2306 941 MobiDBLite consensus disorder prediction 473 513 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 728 749 - -
Ssu3g2306 941 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 874 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 563 588 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 664 685 - -
Ssu3g2306 941 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Ssu3g2306 941 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Ssu3g2306 941 CDD STKc_Nek 7 262 - -
Ssu3g2306 941 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 874 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 910 941 - -
Ssu3g2306 941 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2306 941 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Ssu3g2306 941 SUPERFAMILY Protein kinase-like (PK-like) 4 311 IPR011009 -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 800 821 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 292 317 - -
Ssu3g2306 941 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2306 941 MobiDBLite consensus disorder prediction 272 378 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 346 361 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 573 588 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 362 378 - -
Ssu3g2306 941 MobiDBLite consensus disorder prediction 393 412 - -
Ssu3g2306 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2306 Ssu-Chr3 73667320 73673791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2306 14 263 MAP Kinase Kinase Kinase AT1G53570 31.765 3.11e-37 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Ssu3g2306 Pkinase 3.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2306 K08857 - gmx:100818747 1600.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2306 3 73667320 73673791 Ssu3g2306 3 73667320 73673791 ECH
Ssu8g0719 8 11772605 11778173 Ssu3g2306 3 73667320 73673791 PCT