Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2302 ATGGTGGGTATGAAAGTTTGCATCTTTGTGTTTTTCACCCTGATGATCCCAATGGGTTGTTATGGTGACACAAACCCAAATGATCTCAAAGTTCTGAATGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTCAAATGGCCAGACAATGGAAATGACCCATGTGGCCCTCCCTCATGGCCTTATGTGTTCTGCTCTGGAGGGAGAGTCACTCAGATTCAGACCAAGAATCTAGGTCTTAAAGGACCACTGCCTCCAAACTTTAACCGGCTCTCAGAGCTTCAAAATTTGGGTCTTCAACGCAACAACCTTAGTGGAATGTTACCTTCTTTCAGTGGATTGTCCAAATTGCAATATTCTTTCTTGGATTACAATGAGTTTGATGCAATCCCATCTGATTTCTTCAAAGGACTCACCAGCATCAGGGTCCTGTCTTTGGAGGAAAACCCTTTGAATGCTACCACCGGGTGGTCATTTCCTATGGACTTGGAAAATTCAGTGCAATTGACCAATCTTTCTCTGGTGCATTGTAATTTGGTTGGACCATTGCCTGATTTTCTAGGCACATTGCCTTCTCTCACAAATCTGAGGCTTTCAGACAACAGATTGACCGGTGGCATTCCGGCTAGTTTTGGTCAGTCTTCAATCCAGGTTTTGTGGTTGAATGATCAGGAAGGAGGTGGGATGACAAGTCCTATTGATGTCATTGCTTCAATGACTTTTCTAAGACAGGTTTGGCTTCATGGAAACCAGTTCACTGGGGCAATTCCACAGAACATTGGAAATCTAACTTCCTTGCAGGAGCTCAACCTCAATAGCAATCAACTCGTTGGTTTGATTCCAGATTCCTTGGCAAATATGGACCTTCAGATACTGGTGTTGAATAATAACAGGTTCATGGGTCCAATACCAAAGTTTAAGGCTGCCAAAGTATCTTATGACTCCAATCTCTTTTGCCAATCTAAGCCTGGGCTTGAATGTGCCCCTGAAGTTACTGCACTGCTGGATTTTCTCCATAATCTGAATTACCCTTCAGTTCTTGCTTCTAAATGGTCAGGTAATGATCCGTGCGGAGAGCCGTGGTTCGGATTGAGCTGCGATCGCAATTCAAAGGTATCTATAATCAATTTGCCAAGACAAAAGCTGAATGGTACACTGAGTCCCTCACTTGCAAAGTTAGATTCACTACTTGAAATTAGACTTGCAGGAAATAATATTACGGGCAATGTTCCAAGTAATTTTACTGAATTGAAATCTTTGAGGTTGTTGGATTTAGGTGATAACAATGTTGAACCACCACTGCCAAACTTTCATGGTGGTGTGAAGGTTGTTATTGAGGGTAACCCTCTTCTTGCTAATCAACCTGCAAGTAGTCCCATGCCTGTTACAAGCCCACCACCTTCAAGTGCACAGCCTTCACCTCACAACCCATCACCGTCACCGCCCCCACCATCCTCCCATATGCAACCTCCCCCAAGTCAGAGTCCAAGATCGAATTCGAATCAGTCTGGGTCTGTTCAGTTAAAGCCCCACCAAAATGTCTTCAAAAGATTCAAAACAGTAGCAATAGTAGCTGGAGCTGCAATCTTTACATTTGTAGCTCTTTTGGTTACTTCTCTTGTCATATGTTGcttgaagaaggaaaaagcCTCCTTGGATGCTCCTAGCACTGTTGTGGTGCACACTAAAGATCCATCTTATCCGGAAAAGATGATTAAATTTGCAGGTTCGGATAGCACCACTGGAAGCTTATCAACAAAGACAGGGATAAGTTCTCGGACTAATATTAGTGGTGAAACTGAGAGGTCTCATTTAATTGAGGCTGGCAACATTGCCATCTCTATTCAAGTTCTACGCAAGGTCACCCATGATTTTGCTTCAGAAAATGAGCTAGGCCGTGGTGGGTTTGGAACTGTTTACAAGGGTGAACTAGAAGGTGGCACAAAAATAGCAGTGAAGAGAATGGAGTGTGGAGCTCTTAGCAGTAGAGCACTGGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGGCACCGGCATTTGGTATCCCTGCTAGGCTATTCCAtcgaaaaaaatgaaagacttTTGGTTTATGAATATATGCCTCTGGGTGCTCTAAGCAGGCATCTTTTTCATTGGAAAAGTTTGAAATTGGAGCCTTTGTCTTTGTCACAGAGGCTTACAGTAGCACTTGATGTTGCTAGAGCGATGGAATACCTTCACAGTCTTGCACGCCACACCTTTATCCATCGCGACCTCAAGTCTTCTAATATTCTACTGGGGGATGATTTTCGTGCGAAAGTTTCTGATTTTGGTCTGGTGAAACTTGCCCCAGATGGTGAGAAGTCTGTGGCAACAAAACTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACTACTAAAGTTGATGTGTTCAGCTATGGTGTGGTGTTGATGGAACTTCTGACTGGACTAATGGCTCTTGACGAGAGCCGGCCGGAGGAAAGCCGGTACTTAGCTGAATGGTTTTGGCAAATTAAATCGAGCAAAGAAAAGCTTATGGCTGCCATTGATCCAGCTATTGAAGCAAGTGAAGAGACTTTTGAGAGCATTTCCATTGTGGCTGAACTTGCTGGACACTGCACTGCCAGGGAAGGAACACACAGGCCTGATATGAGCCACGCAGTCAATGTGCTATCCGCATTAGTAGAGAAATGGCGACCTGTTGATGAAGAATATGATTACAGCTCTGGCATTGACTTCAGTCAACCACTTCCCCAGTTGCTGAAAGTTTGGAAGGAAGCAGAAGGCAAAGAATCAAGCTACGCAAGTGAACACAGTGAAGGAAGCATTCCAGCTAGGCCTGCTGGTTTTGCAGACTCTTTTACTTCTGCTGATGCAAGATGA 2913 0.436 MVGMKVCIFVFFTLMIPMGCYGDTNPNDLKVLNDFRKGLKNPELLKWPDNGNDPCGPPSWPYVFCSGGRVTQIQTKNLGLKGPLPPNFNRLSELQNLGLQRNNLSGMLPSFSGLSKLQYSFLDYNEFDAIPSDFFKGLTSIRVLSLEENPLNATTGWSFPMDLENSVQLTNLSLVHCNLVGPLPDFLGTLPSLTNLRLSDNRLTGGIPASFGQSSIQVLWLNDQEGGGMTSPIDVIASMTFLRQVWLHGNQFTGAIPQNIGNLTSLQELNLNSNQLVGLIPDSLANMDLQILVLNNNRFMGPIPKFKAAKVSYDSNLFCQSKPGLECAPEVTALLDFLHNLNYPSVLASKWSGNDPCGEPWFGLSCDRNSKVSIINLPRQKLNGTLSPSLAKLDSLLEIRLAGNNITGNVPSNFTELKSLRLLDLGDNNVEPPLPNFHGGVKVVIEGNPLLANQPASSPMPVTSPPPSSAQPSPHNPSPSPPPPSSHMQPPPSQSPRSNSNQSGSVQLKPHQNVFKRFKTVAIVAGAAIFTFVALLVTSLVICCLKKEKASLDAPSTVVVHTKDPSYPEKMIKFAGSDSTTGSLSTKTGISSRTNISGETERSHLIEAGNIAISIQVLRKVTHDFASENELGRGGFGTVYKGELEGGTKIAVKRMECGALSSRALEEFQAEIAVLSKVRHRHLVSLLGYSIEKNERLLVYEYMPLGALSRHLFHWKSLKLEPLSLSQRLTVALDVARAMEYLHSLARHTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESRYLAEWFWQIKSSKEKLMAAIDPAIEASEETFESISIVAELAGHCTAREGTHRPDMSHAVNVLSALVEKWRPVDEEYDYSSGIDFSQPLPQLLKVWKEAEGKESSYASEHSEGSIPARPAGFADSFTSADAR 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2302 970 MobiDBLite consensus disorder prediction 452 506 - -
Ssu3g2302 970 ProSiteProfiles Protein kinase domain profile. 625 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2302 970 SUPERFAMILY Protein kinase-like (PK-like) 606 901 IPR011009 -
Ssu3g2302 970 SMART serkin_6 625 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2302 970 PANTHER OSJNBA0070M12.3 PROTEIN 6 970 - -
Ssu3g2302 970 Pfam Protein tyrosine and serine/threonine kinase 628 899 IPR001245 GO:0004672|GO:0006468
Ssu3g2302 970 SMART LRR_typ_2 114 137 IPR003591 -
Ssu3g2302 970 SMART LRR_typ_2 417 439 IPR003591 -
Ssu3g2302 970 SMART LRR_typ_2 91 113 IPR003591 -
Ssu3g2302 970 SMART LRR_typ_2 138 161 IPR003591 -
Ssu3g2302 970 SMART LRR_typ_2 190 214 IPR003591 -
Ssu3g2302 970 SMART LRR_typ_2 263 286 IPR003591 -
Ssu3g2302 970 MobiDBLite consensus disorder prediction 941 970 - -
Ssu3g2302 970 MobiDBLite consensus disorder prediction 459 491 - -
Ssu3g2302 970 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Ssu3g2302 970 SUPERFAMILY L domain-like 329 439 - -
Ssu3g2302 970 CDD STKc_IRAK 631 901 - -
Ssu3g2302 970 Gene3D Ribonuclease Inhibitor 26 324 IPR032675 -
Ssu3g2302 970 Gene3D Phosphorylase Kinase; domain 1 586 702 - -
Ssu3g2302 970 PANTHER OSJNBA0070M12.3 PROTEIN 6 970 - -
Ssu3g2302 970 SUPERFAMILY L domain-like 24 306 - -
Ssu3g2302 970 Gene3D Transferase(Phosphotransferase) domain 1 703 919 - -
Ssu3g2302 970 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Ssu3g2302 970 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Ssu3g2302 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Ssu3g2302 970 Gene3D Ribonuclease Inhibitor 329 454 IPR032675 -
Ssu3g2302 970 MobiDBLite consensus disorder prediction 492 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2302 Ssu-Chr3 73608103 73611601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2302 80 914 Receptor kinase-like Gene Family AT1G55610 29.120 5.38e-76 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu3g2302 PK_Tyr_Ser-Thr 7.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2302 - - gmx:100815045 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2302 3 73608103 73611601 Ssu3g2302 3 73608103 73611601 ECH