Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2300 ATGGGGTTTTTGCTGAAAGAGGCTTTGAGAACTCTGGGCTCAAGGAATCGCTGGTCTTATGCCGTCTTCTGGAAGATCGGTTGCAACAATTCCAAGTTGTTAATCTGGGAAGATTACTATTATGAACCCTTGCCACCACCTTTCCCTCCACGAGCCGTTGGGATGTCTAATTTTCCTTACCGAGATGGGGAAGGATGCTGGTTTTCTCCTGAGTCTCAGCTAGGGATTCAGGAAGAGGACAGAGTCCGTGTATTGATTAACAAAATGATGGTGAATAATTCAGTCAGCATTGCTGGAGAAGGGATAGTTGGACGGGCAGCATTTACAGGAAACTATCAGTGGATTCTTTTGAACAATTTCACTAGAGATGCATATCCACCAGAGGTATATCCTGAGTTGCATTACCAATTTTCAGCTGGAATGCAGACAGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAATTAGGTTCTTTCTTGCCGATAATGGAAGATATTGGATTTGTGAATGAAGTGAAGAACTTGATCTTGCAATTGGGATGTGTACCTGGTGCCCTTCTATCTGAAGACTATTCAGCAAAAGTTCCTAGTGAAAAATTTGCTGCACCTCTGACCGTTGATCCACCTGTCACTGCTTCAAACTGCTCTCCCTCTGCGGTTAATGGTTCCAACCAACTAACTAATTCTACTCTTGCTTCAAGGCCTGTAGCTCAGCCACCCCATTCTCTAAGagggaaaataaataattaccaGGATTCTGTTTTGACACCTCAAACCCATAACCCAAACCAGATATTTGATAGCATTTGCCAACCAAAGGCTCATTCaatgattaaaacaaatgtCTGTGGCCAACAGAAGAAGACAGTTGGAGAGGCTGATGCATGTCTGCAACAGCATTCTGTTTATAATGCTAGATCTGCATTCAATGAACTGGTTAGtttcaatcaatcaaatctGAGAGACTGCAGCCTTAAATATATGGAACAAACATCAGGTGTTGGGAGACAGAGTCATGTTAATCCTAACATGAATCCATCAAGTGCCTTAAATATGCCTCAGCTGAAAACAGATGGAAGCCAAATTCTTGAACAGAGTCACAGTTCTGGTTCACCACTTGGAGGAATCCCAATATGTAGTGGGAGTAATTTATTGAGGACAAATATGATTAACTGCCCAGTTTCAAATCCTCCTAAAGTATCCACTTCTGATTTTTCTGGAACACACAAGTTTGGGTTTGGACTTCAGAATAACAATTCAACAACTAATGCTGGGCTTTGTTCTGTGCCTAATTTGACTAATCAATCGGTTACCAGTCACATGAATCTAGATGGCTCTGGTCAGAAGAATTGTACCATTGATTTAAAGAATGCTTGTAATGCTTTGGCTTCCACTGATCAAAGGATAGATGATGATTTGCTGCATGCCCTTAAGATTCCATCTCTTCATCTTGAGGAGCATGTGCCTATGGGTGATCACATCCCTGGTTTTGTTCAAGATTGCCTCAATAAAGATGTTACTAGTCAACATATGATGAAAATGAATGTTAAGCATGACGAAGCCTATACTCAACTTCCATCAGGTGATGACCTCTTCGATGTTTTAGGTGTGGATTTCAAAAGGAGGCTACTCAATGGAAACTGGAATAAGTTGCTTGCCACTGATTCAGATGCCATCGCAGAACATCTAGATAAAAAGGCAACATATATGAATTTGCATGATGTAGGTCCTGATAATAGTTATTCAGTTAATGAAGCAATATCAGACAGTGGCATCTTCTCTGGAACGGGCACTGACCACCTCTTAGATGCTGTGGTTTCAAAAGCTCAATCTGCTGCAAAACAGAATTCTGATGAAATGTCTTGCAGGACAACAATGACAAGGATTAGTAATGCCTCTGTTCCCTCTCCTGCCTGCAAGCAGGTTATGTCTGATCATGTTGTCCAGAGGGGATTGTTTGATTTTCCTAAGATGGGGGTTAAAACAGCTGCTATGGAAACAAGTTCTCTTAAATCTGGGTGTAGCAAGGATGATGCTGGAAACTGTTCTCAAACTACTTCCATATATGGGTCTAAGCTTAGTTCATGGGTTGAGAATGGTAGTAATGTGAAACGTGAAAGTAGTGTTTCAACTGGATACTCCAAGCGACCAGATGAAGTTTGCAAACCGAATCGTAAAAGACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAGGATCGCCAAATGATTCAAGATCGTGTGAAGGAGCTACGGGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACGGGGGAATCTAAGATTGTTAGTAAAGAAGGTGGATTGCTACTAAAAGATAACTTTGAGGGAGGGGCTACATGGGCATACGAGGTTGGCTCACAATCAATGGTTTGTCCTATCATTGTTGAGGATCTTAATCCTCCTCGTCAGATGTTAGTGGAGATGCTTTGTGAGGAACGAGGTTTCTTTCTGGAAATAGCTGACTTAATCGGAGGATTAGGTTTAACCATCTTGAAGGGGGTCATGGAATCTCGCAATGACAAGATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACGAGGATGGACATATTTATGTCACTGGTTCGTGTTTTGGATCAAATGGTGAAGGGCGGTGCGTCTTCATCCAATGCAATTGATAATAACATGATGGTGTATCATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGTACGCCTAGTAGTTTGCAATGA 2829 0.4164 MGFLLKEALRTLGSRNRWSYAVFWKIGCNNSKLLIWEDYYYEPLPPPFPPRAVGMSNFPYRDGEGCWFSPESQLGIQEEDRVRVLINKMMVNNSVSIAGEGIVGRAAFTGNYQWILLNNFTRDAYPPEVYPELHYQFSAGMQTVAVIPVLPHGVVQLGSFLPIMEDIGFVNEVKNLILQLGCVPGALLSEDYSAKVPSEKFAAPLTVDPPVTASNCSPSAVNGSNQLTNSTLASRPVAQPPHSLRGKINNYQDSVLTPQTHNPNQIFDSICQPKAHSMIKTNVCGQQKKTVGEADACLQQHSVYNARSAFNELVSFNQSNLRDCSLKYMEQTSGVGRQSHVNPNMNPSSALNMPQLKTDGSQILEQSHSSGSPLGGIPICSGSNLLRTNMINCPVSNPPKVSTSDFSGTHKFGFGLQNNNSTTNAGLCSVPNLTNQSVTSHMNLDGSGQKNCTIDLKNACNALASTDQRIDDDLLHALKIPSLHLEEHVPMGDHIPGFVQDCLNKDVTSQHMMKMNVKHDEAYTQLPSGDDLFDVLGVDFKRRLLNGNWNKLLATDSDAIAEHLDKKATYMNLHDVGPDNSYSVNEAISDSGIFSGTGTDHLLDAVVSKAQSAAKQNSDEMSCRTTMTRISNASVPSPACKQVMSDHVVQRGLFDFPKMGVKTAAMETSSLKSGCSKDDAGNCSQTTSIYGSKLSSWVENGSNVKRESSVSTGYSKRPDEVCKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLEKTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNPPRQMLVEMLCEERGFFLEIADLIGGLGLTILKGVMESRNDKIWARFAVEANRDVTRMDIFMSLVRVLDQMVKGGASSSNAIDNNMMVYHSFPQATQIPATGTPSSLQ 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2300 942 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 176 IPR025610 -
Ssu3g2300 942 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 942 - -
Ssu3g2300 942 MobiDBLite consensus disorder prediction 701 743 - -
Ssu3g2300 942 CDD bHLH_AtLHW_like 733 802 - -
Ssu3g2300 942 MobiDBLite consensus disorder prediction 701 715 - -
Ssu3g2300 942 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 729 778 IPR011598 GO:0046983
Ssu3g2300 942 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 942 IPR043561 GO:0003700|GO:0006355
Ssu3g2300 942 MobiDBLite consensus disorder prediction 719 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2300 Ssu-Chr3 73527211 73533198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2300 530 917 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.061 4.73e-118 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2300 - - gmx:100786351 1636.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2300 3 73527211 73533198 Ssu3g2300 3 73527211 73533198 ECH
Ssu8g0729 8 11954416 11960554 Ssu3g2300 3 73527211 73533198 PCT