Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2298 ATGAAGAAGTCCAAGCTTGTGAGCATGCTCGATGagGATTGTCACTCATTATTATTTGATCTTAGGGGAAAGGAAACTGGCAGCGGGGTTGGGGCTGCAAAGTCTTACACAGCCCTTGCCTTAAAGACAATCTCAAAGCAATTCCGGTGTCTCAAAGATGCAATCTCTTTACAAATCAAGACAACGAGCAAGACCTTAGGTGAAGATGATTGCTTAGGAGTTAAGGTGGAAGGTTCGAGGCTTAGGTACGTTGATCATCAACTCCGACAACAACGTGCATTACAGCAGCTGGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTGCCAGAACGCGCTGTTTCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCCCGAGTCCGGCTATGGAAGCCAATGGTTGAAGAAATGTACATGGAAGAGGTCAAGCAAGAGCAGAATAATGGCTCCCAGGAAAACAACACAAATAGATCAAAAGAATCGAGCAAGGAGTTATGGTCAGAAGCTAATGCTGCACAAGAATCAGGTGCCATGAGACTTGATCAGATTAATGTTCTCCAATCAAAGACGGAAAGCTTCAACAACCAAGCCACTTCCCCAACAGAGATCTCCAATTCCAATTCACTGTCAACATCTCCCATGGGAGGAAGAGGGTCCCTCCAATCCCAATCTGGTTTCCATCTTGCTGACATGCAAAGTCCAAACAAGCGAAGAAGCACTTCTGAAATGCAAAACTCTCCAGGTAGCATCCTTTCAGTGGACATGGAAATGAAGCCTCATGGAGAGACAAATACTAGAGAAGGAAACATAAAGTTTGGCATTGAAAACCATGGTGGGGGTTTTGGAGCATTTTCAATGGAAGACATTGGAAGGTTTCATGTCACTGAACAACTGGCTCCAAGGTTTCATGGAAATGGTGTTTCTCTCACTCTAGGACTTCCACATAGTGAGAACCTTCCCCTCTCAGGAACCCAACATGGATTCCTCTCACAGAATATGCACTTGGGAATGAGAAGCAATGAAAATGAGTTTTGTGGTGCCATCAATACTCCACCTTCTTCTCATTCAGGCACTAGTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGCTGCGCAGTTGTTGCGAGATTTCGTGGCCTGA 1245 0.4482 MKKSKLVSMLDEDCHSLLFDLRGKETGSGVGAAKSYTALALKTISKQFRCLKDAISLQIKTTSKTLGEDDCLGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKQEQNNGSQENNTNRSKESSKELWSEANAAQESGAMRLDQINVLQSKTESFNNQATSPTEISNSNSLSTSPMGGRGSLQSQSGFHLADMQSPNKRRSTSEMQNSPGSILSVDMEMKPHGETNTREGNIKFGIENHGGGFGAFSMEDIGRFHVTEQLAPRFHGNGVSLTLGLPHSENLPLSGTQHGFLSQNMHLGMRSNENEFCGAINTPPSSHSGTSYESIDIQNRKRFAAQLLRDFVA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2298 414 MobiDBLite consensus disorder prediction 175 211 - -
Ssu3g2298 414 Gene3D - 108 188 - -
Ssu3g2298 414 Pfam Associated with HOX 28 56 IPR006563 -
Ssu3g2298 414 ProSiteProfiles 'Homeobox' domain profile. 102 165 IPR001356 GO:0003677
Ssu3g2298 414 Pfam Homeobox KN domain 122 161 IPR008422 GO:0003677|GO:0006355
Ssu3g2298 414 CDD homeodomain 105 166 IPR001356 GO:0003677
Ssu3g2298 414 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 367 - -
Ssu3g2298 414 MobiDBLite consensus disorder prediction 224 287 - -
Ssu3g2298 414 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Ssu3g2298 414 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 1 367 - -
Ssu3g2298 414 SMART HOX_1 105 169 IPR001356 GO:0003677
Ssu3g2298 414 MobiDBLite consensus disorder prediction 224 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2298 Ssu-Chr3 73371852 73374688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2298 1 414 Homeobox Transcription Factor Family AT2G35940 47.046 2.06e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu3g2298 Homeobox_KN 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2298 - - gmx:100786883 631.713