Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2296 ATGGCCGGAGTTGAAATCCCTCAATATTTCGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACCACCGTGACAGGCATAACCTATGATAGAGAAAGCATAGAACAGTGGTTGCTGAAGGCCAAAGATTGTGTGTGTCCTGTCACCAAACAACCATTGCCAAGAAGCTCTCAATACTTAACCCCTAATCACACACTTCGAAGGCTAATGCAAGCATGGTCTCCAGCAAACACAGCCGACGGTGTTGATCAAACTCCAACCCTGAAAACCCCTTTAAGCAAGATCCAACTTCAGAAGCTCGTGAAGGGTCTTGAGGTTCCTCATTCTCACCAAAAATCGTTGGAGAAGTTGCATGCCTTGGCTTCACAAAGCGAGAGGAACAGAACTTGCATGGCTGAGGCTGGTGTAGCCAAGGCTGTGATCAAAGTGATTAACAAGAATTTCAAGGAAGGAAACACCACTTGCATAGAAGAAGCTCTGAGACTTGTTCATCTTCTTTGGAACAATCACAATAGCATGAAAACTCTAGTTGGGGGGAACTTGGACTTCATCAACTCTTTGACTTGGGTTTTGAAGCTTCATTTGaatgataacaacaacatcAAGATGGTAAACGAGGCAATGCCCCTTTTGAAGCTGACAATTCAAGTTGCTGATTCAACCCTTCTAGGGAGTTTAAGCCTTGAATTCTTCAAGGAAGTGGTGAGTGTATTGAGAAAGAGGGCACTCTCTCAACAAGCCATTAAATCAGCTTTGCATGTGCTTACAGAAACCATCCCTCTGGGTAGAAACAGAAAGAGGATTGTTGAAGCAGGTGCAGTCACGGAACTCATAGAGCTTGAGCTTGAAAAGCCAGAGAAGAACATGACTGAGCTCATATTCAACCTTTTGGCACATCTATGCTCTTGTGCTGACGGAAGGGAACAGTTTCTGAGACACCCTGCGGGCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCAAAGGAGGTTGTTCGAGAGATGCTAAGGGTTGGAGCCGTGTCAAAGCTTTGCATGGTGATGCAAGCGGATTGTGGTgcttatttgaaagaaaaagcaagagACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCCCCTTGCATACAGGTTTATCTGTTAACTAGGCACCAAAGGTGA 1230 0.435 MAGVEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEQWLLKAKDCVCPVTKQPLPRSSQYLTPNHTLRRLMQAWSPANTADGVDQTPTLKTPLSKIQLQKLVKGLEVPHSHQKSLEKLHALASQSERNRTCMAEAGVAKAVIKVINKNFKEGNTTCIEEALRLVHLLWNNHNSMKTLVGGNLDFINSLTWVLKLHLNDNNNIKMVNEAMPLLKLTIQVADSTLLGSLSLEFFKEVVSVLRKRALSQQAIKSALHVLTETIPLGRNRKRIVEAGAVTELIELELEKPEKNMTELIFNLLAHLCSCADGREQFLRHPAGIAVVSKRVLRVSAATDDRAIHVFSVIAKFSASKEVVREMLRVGAVSKLCMVMQADCGAYLKEKARDILRLHSKVWNNSPCIQVYLLTRHQR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2296 409 PANTHER WDSAM1 PROTEIN 4 406 IPR045185 GO:0061630
Ssu3g2296 409 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 406 - -
Ssu3g2296 409 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Ssu3g2296 409 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Ssu3g2296 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 79 IPR013083 -
Ssu3g2296 409 SUPERFAMILY ARM repeat 114 387 IPR016024 -
Ssu3g2296 409 SUPERFAMILY RING/U-box 4 80 - -
Ssu3g2296 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Ssu3g2296 409 Gene3D - 99 390 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2296 Ssu-Chr3 73325334 73326563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2296 4 399 U-box Gene Family AT2G35930 39.801 1.03e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2296 - - gmx:100811293 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2296 3 73325334 73326563 Ssu3g2296 3 73325334 73326563 ECH
Ssu8g0733 8 12049020 12050261 Ssu3g2296 3 73325334 73326563 PCT