Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2295 ATGGATGAAATCGAGGTTCCTGCCCTTTTCCTCTGCCCAATTTCTTTGCAGCTTATGAGAGACCCTGTCACAGTATGCACAGGAATCACATACGACAGAAAAAGCATAGTGAGATGGTTATTTTCATGCAAGAAGAACAAAACCTGCCCTGTCACTAAGCAATCACTGTTACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCATGCTTGGTGCACCCACAATGCCTGGCTTGGAATTGAAACTACTTCATCTCCAAAGCCAACCATTGACCAAACTGAAATTGTCAAACTCCTCTTAGAAGCAAAGAAGTTCCCGGAAAAGCGACTCAAGTGTCTTAGAAGGCTTCAATCTATTGCCTTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCCACCATGATAATAAATTCAAGTGTTACGAGTGAAGCAGCTATAGAAGTCTTGTTTCACCTAAACCCTTCTGAATCTCACCTTAAAAACCTGATGAACAATGAGGGGATTCAATTTACCGAGTCTTTGTTTCGTGTCCTGAAGCTTGGAAAGTACCAATCTCGAGCTTATGCAACTGTGCTATTGAAGTCAGCGTTTGAGGTGGCTGGCCCAACCCAATTGAGCAATGTAACATCAGAGCTGTTTGTGGAGATAATTAGAGTGTTAAGGGATCAGATTTCACAAGAGGCTTCTACGGCAGCATTGAAGCTTCTTGTGGAGTTGTGTTCATGGGGTAGGAACAGGATCAAAGCAGTTGAGGGTGGTGGGGTTTTAGTCCTCATTGAGCTACTTCTTGATGTGTCTGAAAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGACAGCCTTTGTGGCTGTGCAGAAGGAAGGGCAGAATTGGTGAACCATGGAGCTGGAGTGGCTATTGTGTCCAAGAAAATTCTGAGGGTTTCTCAAGTGGCAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTTGTAGGCATTCAGCCACCCCTAGAGTCCTTCATGAAATGCTGCTATTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGGAGGGTAGTTTCAAGGCTAAGGAGAGGGCCAGGGAGACACTCAAATTGCACTCTACCGTTTGGAGGAATTCCACATGTATTCCTATCCCTTTGCTTGCATCCTACCCGTGA 1200 0.445 MDEIEVPALFLCPISLQLMRDPVTVCTGITYDRKSIVRWLFSCKKNKTCPVTKQSLLHTDLTPNHTLQRLIHAWCTHNAWLGIETTSSPKPTIDQTEIVKLLLEAKKFPEKRLKCLRRLQSIAFESESNKICLESAGAIDFLASTMIINSSVTSEAAIEVLFHLNPSESHLKNLMNNEGIQFTESLFRVLKLGKYQSRAYATVLLKSAFEVAGPTQLSNVTSELFVEIIRVLRDQISQEASTAALKLLVELCSWGRNRIKAVEGGGVLVLIELLLDVSERRACELMLIALDSLCGCAEGRAELVNHGAGVAIVSKKILRVSQVASDRGVKILTSICRHSATPRVLHEMLLFGAVSKLCLVLQVEGSFKAKERARETLKLHSTVWRNSTCIPIPLLASYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2295 399 SUPERFAMILY ARM repeat 108 377 IPR016024 -
Ssu3g2295 399 PANTHER OS11G0573500 PROTEIN 1 399 - -
Ssu3g2295 399 CDD RING-Ubox_PUB 10 54 IPR045210 -
Ssu3g2295 399 SUPERFAMILY RING/U-box 3 83 - -
Ssu3g2295 399 Gene3D - 84 387 IPR011989 -
Ssu3g2295 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Ssu3g2295 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Ssu3g2295 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Ssu3g2295 399 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Ssu3g2295 399 PANTHER WDSAM1 PROTEIN 1 399 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2295 Ssu-Chr3 73282193 73283392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2295 2 399 U-box Gene Family AT2G35930 52.346 3.95e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2295 - - var:108340160 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2295 3 73282193 73283392 Ssu3g2295 3 73282193 73283392 ECH
Ssu8g0734 8 12072959 12074167 Ssu3g2295 3 73282193 73283392 PCT