Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2292 ATGGACGTTGATTCCTCGATGGTGCCGGAGGCCGATCACGATCCGGCGGTGCAGAACCACGCCGAGAGAGACCAGCTGGGAGAATCTCCATCGCCGCTGcagccgccgccgccgccgcctcCAGGAGGCGGATCTCCAGCTCAGTCGCCGGCGCAACAGCAGCAACAGCCGCCGCCGGCGACGTCGGCTCAGGCGCAGCACAGTCCAGTGGTCGGTCCGAGGCTCGCGCCGACTTACTCAGTGGTGAATGCGATTTTGGAGAAGAAGGAGGACGGGCCGGGGCCGCGGTGCGGCCACACGTTGACGGCGGTGGCGGCGGTCGGAGAGGAGGGAACGCCGGGGTACATTGGTCCGAGGCTGATTTTGTTCGGCGGTGCCACGGCACTTGAAGGGAATTCCGCAGCGTCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATAcGTTTAGCTGGTGCCACTGCTGATGTCCACTGTTATGATGTCATAACTAATAAATGGTCTAGGATAACTCCCATTGGAGAGCCTCCAACCCCAAGGGCTGCACATGTGGCAACTGCTGTGGGAACGATGGTAGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCTGCAGAGGACCTTCATGTTCTTGATCTCACTCAGCAACGACCACGATGGCACAGAGTTGGTGTTCCAGGCCCTGGACCAGGGCCACGCTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACAGCTGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCCAGTGCACGCTCTGACGGGCTTCTGCTGCTTTGTGGAGGGAGAGATGCTAGTAGTGTTCCATTGTCAAGTGCATATGGACTTGCTAAGCATAGGGATGGTCGTTGGGAATGGGCCATTGCCCCTGGTGTCTCACCATCTCCAAGATATCAGCATGCAGCAGTATTCGTTAATGCAAGGCTTCATGTGTCTGGTGGGGCTCTTGGAGGAGGACGGATGGTTGAAGATTCATCGAGTGTTGCAGTGTTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACGGGTAGATACAGTGCTGATGCAGCTGGTGGAGATGCCTCAGTTGAGTTGACACGGCGTTGTAGGCATGCTGCTGCTGCTATTGGtgacttgatttttatttatggtGGTTTACGTGGCGGGGTCTTGCTGGATGATCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAAACAACAACTGCTGCTTCCCATGCTGCTGCAGCAGCTGCATCTAATGTACAAGCCGGACGATTACCTGGACGGTATGGATTTGTTGATGATAGGACAAGGCAAGGCATGCCAGAAACAGCTGCTGATGGTGCAGTTGTTTTGGGAACTCCAGTTGCCCCCCCTGTAAATGGCGACATATATACTGATATCAGCACTGAAAATGCCATGCTCCAGGGATCTAGGCGAACTAGCAAAGGAGTTGAGTATCTAGTTGAAGCATCAGCTGCAGAAGCTGAAGCTATCAGTGCGACACTGGCTGCTGCCAAGGCACGACAAGTGAATGGTGAAGTTGAATTGCCTGACCGGGACCGTGGGGCTGAGGCAACACCTAGCGGGAAACAAATATCTTCCTTGATTAAGCCTGATTCTGCTGGGTCAAATAGCATTCCTCCTGGTGGAGTGAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGAGCATTAGGTGGCATGGTCAGACAGCTTTCAATTGATCAGTTTGAGAATGAAGGCAGACGGGTCAGTTATGGGACCCCTGAAAGTGCAACAGCTGCTAGAAAATTATTAGACCGGCAGATGTCTATCAATAGTGTCCCAAAGAAGGTTGTAGCTCACCTCTTAAAGCCTCGTGGCTGGAAACCACCAGTTCGCCGGCAGTTTTTCTTAGACTGCAATGAAATTGCAGATCTTTGTGATAGTGCGGAACGCATATTTTCAAGTGAACCGAGTGTCTTACAGCTTAGGGctccaattaaaatatttggtgaTTTACATGGGCAATTTGGTGATCTCATGCGCCTCTTTGATGAGTATGGTGCACCATCAACTGCTGGTGACATAGCATACATTGACTATCTATTCCTTGGAGATTATGTTGATAGGGGCCAACACAGCCTGGAAACTATTAGCCTTCTGCTTGCTCTGAAGGTTGAGTATCCAAACAATGTACATTTAATACGTGGAAACCATGAAGCCGCAGATATTAATGCCCTTTTTGGTTTCCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGACGGAATTTGGGCATGGCACCGTATAAACCGTCTGTTTAATTGGCTTCCTCTGGCAGcgttaattgagaaaaaaattatttgcatgCATGGGGGTATTGGTCGTTCAATAAATCATGTGGAACAAATTGAGAATATTCAGCGTCCGATTACGATGGAAGCAGGATCAATTGTGCTTATGGACCTATTGTGGTCTGATCCTACGGAGAATGACAGTGTGGAAGGGCTGCGGCCAAATGCTAGGGGTCCAGGATTAGTTACTTTTGGGCCTGATCGTGTCATGGAATTTTGCAACAACAATGATCTTCAGCTGATTGTCCGTGCACATGAATGTGTGATGGATGGCTTTGAGCGTTTTGCCCAGGGACATTTGATCACACTTTTCTCAGCTACAAACTACTGTGGTACCGCAAATAATGCTGGGGCGATATTAGTTTTGGGTAGAGATCTTGTTGTGGTTCCTAAATTGATTCATCCATTACCACCTGCAATTTCTTCACCAGAAACGTCACCAGAACGTCATATTGAGGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACACCAACTAGAGGCCGTCCTCAAGTAACAAATGACCGAGAAAGCTTGAAGGACCAGCTTTTCTTTGTCCTGGTTCTCACCACTCAATCAGATACAAGTTCGAGAAGCAAAGTTGGTAGCCACTGCTAG 3099 0.4898 MDVDSSMVPEADHDPAVQNHAERDQLGESPSPLQPPPPPPPGGGSPAQSPAQQQQQPPPATSAQAQHSPVVGPRLAPTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVITNKWSRITPIGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLSSAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAIGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAASNVQAGRLPGRYGFVDDRTRQGMPETAADGAVVLGTPVAPPVNGDIYTDISTENAMLQGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISSLIKPDSAGSNSIPPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVVAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRESLKDQLFFVLVLTTQSDTSSRSKVGSHC 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2292 1032 SUPERFAMILY Metallo-dependent phosphatases 664 969 IPR029052 -
Ssu3g2292 1032 MobiDBLite consensus disorder prediction 47 68 - -
Ssu3g2292 1032 MobiDBLite consensus disorder prediction 553 592 - -
Ssu3g2292 1032 PIRSF STPPP_BSU1 41 1008 IPR012391 GO:0004721|GO:0009742
Ssu3g2292 1032 ProSitePatterns Serine/threonine specific protein phosphatases signature. 775 780 IPR006186 GO:0016787
Ssu3g2292 1032 SMART pp2a_7 678 962 IPR006186 GO:0016787
Ssu3g2292 1032 Pfam Kelch motif 337 383 IPR011498 GO:0005515
Ssu3g2292 1032 MobiDBLite consensus disorder prediction 30 46 - -
Ssu3g2292 1032 Pfam Calcineurin-like phosphoesterase 706 913 IPR004843 GO:0016787
Ssu3g2292 1032 Pfam Galactose oxidase, central domain 231 284 - -
Ssu3g2292 1032 MobiDBLite consensus disorder prediction 1 73 - -
Ssu3g2292 1032 PRINTS Serine/threonine phosphatase family signature 741 768 IPR006186 GO:0016787
Ssu3g2292 1032 PRINTS Serine/threonine phosphatase family signature 842 869 IPR006186 GO:0016787
Ssu3g2292 1032 PRINTS Serine/threonine phosphatase family signature 924 940 IPR006186 GO:0016787
Ssu3g2292 1032 PRINTS Serine/threonine phosphatase family signature 902 922 IPR006186 GO:0016787
Ssu3g2292 1032 PRINTS Serine/threonine phosphatase family signature 706 733 IPR006186 GO:0016787
Ssu3g2292 1032 PRINTS Serine/threonine phosphatase family signature 774 798 IPR006186 GO:0016787
Ssu3g2292 1032 PRINTS Serine/threonine phosphatase family signature 812 838 IPR006186 GO:0016787
Ssu3g2292 1032 Gene3D - 642 988 IPR029052 -
Ssu3g2292 1032 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 1003 - -
Ssu3g2292 1032 MobiDBLite consensus disorder prediction 570 584 - -
Ssu3g2292 1032 CDD MPP_Bsu1_C 658 960 IPR041758 -
Ssu3g2292 1032 Gene3D - 319 467 IPR015915 GO:0005515
Ssu3g2292 1032 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1003 - -
Ssu3g2292 1032 SUPERFAMILY Kelch motif 151 440 IPR015915 GO:0005515
Ssu3g2292 1032 Gene3D - 77 199 IPR015915 GO:0005515
Ssu3g2292 1032 Gene3D - 200 318 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2292 Ssu-Chr3 73202521 73215498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2292 670 905 Calmodulin-binding Proteins AT5G63870 29.044 1.86e-25 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2292 3 73202521 73215498 Ssu3g2292 3 73202521 73215498 ECH
Ssu8g0738 8 12132371 12147771 Ssu3g2292 3 73202521 73215498 ECH
Ssu8g0738 8 12132371 12147771 Ssu3g2292 3 73202521 73215498 PCT