Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2289 ATGTTCGGGAGGGCACCGAAGAAGAGCGACAACACGAGGTACTACGAAATCCTCGGCGTCTCCAAGAACGCTTCGCAGGATGATTTGAAGAAGGCTTACAAGAAAGCCGCCATCAAGAACCACCCCGACAAGGGCGGCGATCCCGAGAAGTTTAAAGAGCTGGCGCAGGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAGGACGCGCTCAAGGAAGGAATGGGTGGTGGCGGTGGCCACGACCCGTTTGACATCTTCTCGTCCTTCTTTGGTGGTGGGAGTCCCTTTGGATCAGGTGGTAGTAGTCGAGGTAGGAGGCAGAGACGCGGAGAAGATGTGGTTCACCCTCTCAAGGTCTCTTTGGAGGACCTTTACCTCGGGACTTCTAAGAAGCTCTCCCTCTCCAGGAATATCATATGCGCCAAGTGCAGTGGAAAGGGTTCTAAGTCTGGGGCTTCAATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACACCTTGGTCCTTCCATGATTCAGCAGATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGATAGAGACCGCTGCCTGCAGTGCAAGGGGGAGAAGGTTGTGCAGGAGAAGAAAGTTCTTGAAGTTATTGTGGAGAAGGGAATGCAGAACGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCGGACACAACTACTGGGGATATCGTCTTTGTGCTTCAGCAGAAGGAACATCCCAAATTTAGAAGAAAGGCTGAAGACCTTTTTGTAGAGCACACCTTGTCCCTTACTGAGGCCTTATGTGGCTTCCAGTTTGTGCTGACTCACTTGGATGGGCGCCAGCTTCTTATAAAGTCAAATCCCGGGGAAGTTGTCAAGCCTGATTCATACAAGGCTATTAATGATGAGGGAATGCCGATGTACCAGAGACCATTTATGAAGGGAAAGCTTTACATTCACTTCACTGTGGAATTCCCTGATTCTCTAAATCCTGATCAGGTTAAGGCCTTGGAGGCCGTTCTGCCACCAAAGCCTTCTTCACAGTTGACAGACATGGAGCTGGACGAGTGTGAGGAAACAACACTCCATGATGTCAATATGGAGGAGGAGACTAGGAGGAAGCAGCAGCAACAAGCTCAGGAGGCATACGAGGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGCGCCCAGCAGTAA 1257 0.4996 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNIICAKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCLQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTTTGDIVFVLQQKEHPKFRRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPDQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQQAQEAYEEDDDMPGGAQRVQCAQQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2289 418 CDD DnaJ 14 63 IPR001623 -
Ssu3g2289 418 Pfam DnaJ domain 14 71 IPR001623 -
Ssu3g2289 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Ssu3g2289 418 MobiDBLite consensus disorder prediction 376 398 - -
Ssu3g2289 418 Gene3D - 148 214 - -
Ssu3g2289 418 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 418 IPR044713 GO:0006457|GO:0030544
Ssu3g2289 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Ssu3g2289 418 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Ssu3g2289 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 114 272 IPR008971 GO:0006457|GO:0051082
Ssu3g2289 418 PRINTS DnaJ domain signature 15 33 IPR001623 -
Ssu3g2289 418 PRINTS DnaJ domain signature 46 66 IPR001623 -
Ssu3g2289 418 PRINTS DnaJ domain signature 66 85 IPR001623 -
Ssu3g2289 418 Gene3D DnaJ domain 10 108 IPR036869 -
Ssu3g2289 418 Coils Coil 382 403 - -
Ssu3g2289 418 CDD DnaJ_C 119 346 - -
Ssu3g2289 418 SMART dnaj_3 12 66 IPR001623 -
Ssu3g2289 418 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Ssu3g2289 418 Gene3D - 262 344 - -
Ssu3g2289 418 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Ssu3g2289 418 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Ssu3g2289 418 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Ssu3g2289 418 Hamap Chaperone protein DnaJ [dnaJ]. 10 369 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Ssu3g2289 418 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 418 - -
Ssu3g2289 418 Gene3D - 109 260 - -
Ssu3g2289 418 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Ssu3g2289 418 MobiDBLite consensus disorder prediction 375 418 - -
Ssu3g2289 418 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2289 Ssu-Chr3 73138567 73140808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2289 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.12e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2289 K09503 - gmx:547558 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2289 3 73138567 73140808 Ssu3g2289 3 73138567 73140808 ECH
Ssu8g0748 8 12231046 12232992 Ssu3g2289 3 73138567 73140808 PCT