Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2286 atgtcaATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATGCAGCGGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTAACAGTTAACATGGGAGCGTCACTTCAAACATTTCCCCCTCAAGACCCTCATCAGTCACAGAAACAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCATCATCTtcaaaatgtaacaaaatagcTCCATTTGAGGCAGTAGAGCATGAACAAGCTAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAAAGGATCAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCGGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAACAAGCAAGCAAAGTTGGACCAGGGGGAAGGAGCTGAAAAGTCGAATGGATTCTACTGA 555 0.4396 MSMEMMATERVCYVHCNFCNTILAVSVPCSGLLTIVTVRCGHCANLLTVNMGASLQTFPPQDPHQSQKQHLSFEEPSSKELGSSSSKCNKIAPFEAVEHEQARIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNKQAKLDQGEGAEKSNGFY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2286 184 Gene3D High mobility group box domain 99 158 IPR036910 -
Ssu3g2286 184 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 184 - -
Ssu3g2286 184 SUPERFAMILY HMG-box 107 154 IPR036910 -
Ssu3g2286 184 Pfam YABBY protein 7 161 IPR006780 GO:0007275
Ssu3g2286 184 MobiDBLite consensus disorder prediction 58 86 - -
Ssu3g2286 184 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2286 Ssu-Chr3 73085250 73092334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2286 1 184 C2C2-YABBY Transcription Factor Family AT1G08465 62.827 6.88e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu3g2286 YABBY 2.4e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2286 K25796 - gmx:100500026 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0752 8 12281979 12291621 Ssu3g2286 3 73085250 73092334 PCT