Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2284 atgaagatgatgacaaAGATGCCTGTGTCTGCTGTTAAATCTGGTGGAAGGGGTGGTGGTGGAAGAGGAGCATTGGGGCGATCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGTTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAGTCTGAAAAAGCCAAAGAGCTAGGAACTTCCTTCCTCACAGAGGATGGGTTGTTTGATATGATTTGTGCATCAAAACCTGCAAAAGTTCCTTCACATGAAGACAAGAAACCTGTGAATAAGGCTGTTGCTGTAGCATCCCAGTCAAAAGTTTCTCCGAAATCACAAGTTAAGGTCCCTCTATCTTCACGCTCACCTTCTAAGCAAGCCAAGCCAAAGACAGTTCATTCTTCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAATCAATCACTTGTTTCACAGCTTCGTAATTGGTTGAAAACTTGGCATGAGCAATTTTTAGACACTGGTAACAAAAAACAGGGAAAAAAGCAAAATGACTCTGGTTCCAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGATCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATGGCAGAATTGAAAAAGGAATTGGTGGAAGCAATTCAAATTCTACCAAGGAACTTGTAACCAATGAGGCCCTTGGTGCTAATATGGAGCGGTCAAAGCAATCCAAATCTGTGCTTATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAGATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTATGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAGCAGATGGCAAAGAAGTTGTTGGATGTTGTAAAGGCTGAAGGGCTTCAAGTTAATCAGATTGCACTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATACGAATGGCACTAAACCAGTTACAATATATGAGCCTCTCCATGTCAGTTATCAACTATGATGATATTAGGCAGCGCTTTCTTACCAATGTGAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAaGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATCCAGgaaaattatattaattataggcCAAGCTTGGCTGCTAAGGATGACAGTGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGCAGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTAGCATCATGCATAATTCCTGCTTCGTTGTTGCATGGGCAAAGGGAAATACTTGAACAGGGAGAACGGAATTTTAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCAACAATGGGCAAAAACTTGAGGCTTTTGGATGATCTGCATGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGATACCATTCGCTTGGAATACCTTACTCTTCTTCTTAAACAATTGACAGAACCCCTGCGAACCCTGCCTAAGGCTGAAGCAGTTCAGCAAGTTGTGGAATTCATGAATAAATACCTTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGTCTGCCATTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAGTTCTCGGGTGGTTCGATTTGCTGATCTAATTACTCTTCCTGGAGTAAAGAAGGTCCCTAAGAAGCGGATTGCTGCTATTCTTGAACCGGCTGACGAAGGAGGGGAAAAAGGTGAAGGTGACACCTTGGACGAGAGCGAAGAAGAGAACAGCTCTGATACAGAAGAGTTGGTAGAAGGCACCACCAAGGGGGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAGGCCACGCAAGTACAGTTGGAACTGAAGGGAACGGGAAGTTCAAGTTCCAAGAAGACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGGGCAGAAGGTTGCTCCAACTGCAAAGACTACttcaaagagaaaaaggtgA 2439 0.4239 MKMMTKMPVSAVKSGGRGGGGRGALGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLVGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMICASKPAKVPSHEDKKPVNKAVAVASQSKVSPKSQVKVPLSSRSPSKQAKPKTVHSSLMWTEKYRPKDPKDIIGNQSLVSQLRNWLKTWHEQFLDTGNKKQGKKQNDSGSKKAVLLSGTPGIGKTTSAKLICQELGFQAIEVNASDSRGKADGRIEKGIGGSNSNSTKELVTNEALGANMERSKQSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLMNYCLLLSFRKPTKQQMAKKLLDVVKAEGLQVNQIALEELAERVNGDIRMALNQLQYMSLSMSVINYDDIRQRFLTNVKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSLAAKDDSGIKRMNLIARAAESIADADIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRLEYLTLLLKQLTEPLRTLPKAEAVQQVVEFMNKYLISQEDFDTIVELSKFKGHPNPLDGIQSAIKSALTKAYKEQSSSRVVRFADLITLPGVKKVPKKRIAAILEPADEGGEKGEGDTLDESEEENSSDTEELVEGTTKGEKLQSELQSLNSKATQVQLELKGTGSSSSKKTSGGRGKGASASGQKVAPTAKTTSKRKR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2284 812 CDD BRCT_RFC1 61 138 - -
Ssu3g2284 812 Coils Coil 753 773 - -
Ssu3g2284 812 SMART AAA_5 247 385 IPR003593 -
Ssu3g2284 812 Gene3D - 195 383 IPR027417 -
Ssu3g2284 812 Pfam BRCA1 C Terminus (BRCT) domain 64 138 IPR001357 -
Ssu3g2284 812 MobiDBLite consensus disorder prediction 45 60 - -
Ssu3g2284 812 Gene3D - 384 454 - -
Ssu3g2284 812 MobiDBLite consensus disorder prediction 727 744 - -
Ssu3g2284 812 PIRSF RFC1 13 787 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Ssu3g2284 812 MobiDBLite consensus disorder prediction 233 255 - -
Ssu3g2284 812 MobiDBLite consensus disorder prediction 716 812 - -
Ssu3g2284 812 SUPERFAMILY BRCT domain 61 143 IPR036420 -
Ssu3g2284 812 MobiDBLite consensus disorder prediction 1 61 - -
Ssu3g2284 812 MobiDBLite consensus disorder prediction 161 192 - -
Ssu3g2284 812 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 785 - -
Ssu3g2284 812 Gene3D BRCT domain 38 139 IPR036420 -
Ssu3g2284 812 PANTHER REPLICATION FACTOR C SUBUNIT 1 10 785 - -
Ssu3g2284 812 Pfam ATPase family associated with various cellular activities (AAA) 251 351 IPR003959 GO:0005524|GO:0016887
Ssu3g2284 812 ProSiteProfiles BRCT domain profile. 61 138 IPR001357 -
Ssu3g2284 812 SUPERFAMILY post-AAA+ oligomerization domain-like 455 600 IPR008921 GO:0003677|GO:0006260
Ssu3g2284 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 444 IPR027417 -
Ssu3g2284 812 CDD HLD_clamp_RFC 384 442 - -
Ssu3g2284 812 MobiDBLite consensus disorder prediction 754 792 - -
Ssu3g2284 812 Pfam Replication factor RFC1 C terminal domain 524 686 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Ssu3g2284 812 Gene3D - 456 565 - -
Ssu3g2284 812 SMART BRCT_7 63 141 IPR001357 -
Ssu3g2284 812 CDD AAA 244 347 - -
Ssu3g2284 812 MobiDBLite consensus disorder prediction 145 193 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2284 41 768 Core DNA Replication Machinery Family AT5G22010 72.011 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2284 K10754 - gmx:100790070 1300.8