Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2277 ATGTTCAACGGTATGATGGATCCCGATTTGATCAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCAAATCCGGAGCTGATGAGGATGGCTTCGGATAGCATGAAGAACATGAGTGCTGAAGACTTTAAACTTGCTGCTGAGCAGTTAAAGCATACCCGTCCGGAAGAAATGGCTGAGATTGGTGAGAAGATGGCTAATGCAACCCCTGATGAAGTGGCAGGGATGCGTGCCCACGTTGATGCCCAGATCAAGTATCAGTTGAGTGCTGCTGATTTGTTGAAGAAGCAGGGAAATGAACTTCATAATCAAGGAAGGTACAATGATGCTTTGAAGAAGTATATGCTTgCTAAGGAAAACATTAAAGAGATTCCATCCTTCCAAAGTAGACAGCTTCTTTTGGCATGCTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCGAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCTACTAAAAGATGCTGTTTCTGATTTGAGCAAGGCACTTGAAGTGTCCCCTGATGATGATACAATTGCACAGCTTTTACGGGAGGCCACGGAAAAATTGACAATGCAAGGTCAAGGTGGTGAGCGTGCACCTAGAAAACTAGTAATTGAAGAAATAACTGAAGAAGTTGAGGATGCGCCTCCTGGAAGCTCTTCTTTGGAGCAAACAGTGGTTCAACCAAAAAAATCTGGTGACTCCTCTAAGAGTTGCAGTACAGCTAACAATGGAAATCCAAAAACAAATGCAGACAATTTAGATGCATTGAAAAAAGATCCCGAAGCTGTCAGaTCATTCCAAAACTTCATTTCAAATACTGATCCTGCCATGCTGGCTTCTTTGAACACTGGACAATTCAAAGATGTGTCTCCAGATATGATTAAAACTACGTCTGATATGATTGGCAAGATGTCTCCTGAGGAACTTCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAACCCATTTTTTAGAGGAGGTTCCCCTGATTCTTCTTTCAAACCTGGATCAATGCCTCCCAATGTAACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCAGATGACCTTAAGAAGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCTATTCCAGCAGCAGCAGCTGTAGATGAGAATGAAAGAAATGTTTCTCGGTCAAGCTTACCATCATCAAGTACTAATGGAACTACTGCTTTTGGAGAATCAAGTTCTCATAATGTGTTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTACCTTCCTCAAGTACCGATCTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTTACATCcatgattaaaaatatgagCCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGATGCGGCAAGAGCTCAGCAAGCCATGTCATCCTTATCGCCAGAGAGCTTGGATAAAATGATGCTTTGGGCGGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCAATATGCATGCTCATTTTGGCCGTGATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1761 0.4208 MFNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASDSMKNMSAEDFKLAAEQLKHTRPEEMAEIGEKMANATPDEVAGMRAHVDAQIKYQLSAADLLKKQGNELHNQGRYNDALKKYMLAKENIKEIPSFQSRQLLLACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVSDLSKALEVSPDDDTIAQLLREATEKLTMQGQGGERAPRKLVIEEITEEVEDAPPGSSSLEQTVVQPKKSGDSSKSCSTANNGNPKTNADNLDALKKDPEAVRSFQNFISNTDPAMLASLNTGQFKDVSPDMIKTTSDMIGKMSPEELQKMLDMASSFQGDNPFFRGGSPDSSFKPGSMPPNVTPDMFKAASDMISKMPADDLKKMFEMASSLKGKESIPAAAAVDENERNVSRSSLPSSSTNGTTAFGESSSHNVFSNMRNASQSNLPSSSTDLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEDAARAQQAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAICMLILAVILHRLGFIGG 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2277 586 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Ssu3g2277 586 MobiDBLite consensus disorder prediction 422 454 - -
Ssu3g2277 586 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Ssu3g2277 586 PANTHER OUTER ENVELOPE PROTEIN 61 58 585 - -
Ssu3g2277 586 MobiDBLite consensus disorder prediction 429 454 - -
Ssu3g2277 586 MobiDBLite consensus disorder prediction 250 292 - -
Ssu3g2277 586 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 58 585 - -
Ssu3g2277 586 Gene3D Tetratricopeptide repeat domain 90 236 IPR011990 GO:0005515
Ssu3g2277 586 SUPERFAMILY TPR-like 95 227 IPR011990 GO:0005515
Ssu3g2277 586 MobiDBLite consensus disorder prediction 256 289 - -
Ssu3g2277 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Ssu3g2277 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Ssu3g2277 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Ssu3g2277 586 SMART tpr_5 146 179 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2277 Ssu-Chr3 72932025 72936821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2277 93 227 Calmodulin-binding Proteins AT5G48570 34.752 2.08e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2277 - - gmx:100800315 1028.85