Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2269 ATGTTTAGAGGTGGTGGACTCTCCATGAATTCAGATCCAATTGGGAGCTTCTACCTCCACAAGCCAATTGTTCTCAACTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTAGTCCCCACAACAACATGGACGCCACAGTTAGCACCGAAGGCTCTTCTTCTCCCACCATCCCCTTCCAAGTCAACCTTAGCCGTTCCTCCAACAACCATGCCTCTTCCCCACCTTCTCACAACAACAGAACCGAGATGGACTTCTTCTCCGATAAGAACATCAAAGATGACAACGTTGCCGCTTCTGCCTCTTCCTCTCTCCCCGACAATGATCATCATTCCACCACTCCACCTACGCTGGAATTCAAAGTAAACactGGTCTGAATCTTCTCACTACCAACACTAGCAGCGATCAATCTATGGTGGACGATGAGATATCACCCAATTCAGAAGACAAAAGAGCTAAGCATGAGCTGGCTGTTCTTCAAGCTGAGCTTGAGCGAATGAAGAGGGAGAATCAGAAGTTGAGGGACACGCTTGATCAGGTTAACACCAATTACAACGCTCTTCAGATGCATTTGGTGAATTTGACGCAGGAGCAGAAGGCCGAGGAAGTTGAAGAACAAGAAGTTTTTGGTGGAAAATTGGAAGAGAAGAAGCATGGCGATAATGGTGGGGTATTGGTGCCAAGGCAGTTTATGGATCTTGGGTTGGCTACTAATGCTGACACTGATGAACCCTCTTCTTCATCGGGCGGAAGAAGTCAAGATCGATCAGGATCACCCGGGAATAATAACGTAGAAGTGGCTTCCAAGGAATTAGGGACTAGTAAGAATAATGGGAATGTTAATGATGAAGGAGTTGTGTATGACCAAGAGAAGAAGAAGTATTGTAGGGGGATTGAAAGAGAGGATAGTCCTTTAGGTCATGCTTTTGCTGGTGATAATAAAGTTCCAAGGTTCAGTCCTCCAAAGAATAATGTTGATCAGGCTGAGGCCACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGACCGAACAGTCCTTATCACAACCTATGAAGGCAATCACAACCACCCTTTGCCTCCAGCGGCTATGGCAATGGCACAAACCACTTCCTCAGCAGCAAGAATGCTGCTTTCTGGATCAATGTCAAGTCCTGACAGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTCCCTTGCTCTTCAAGCATGGCCACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACTCAATCTCCAAACCCTCTACAGTTCCCACGGCATCCAAGCCAGTTACAAATCCCCCTTCAAGGTCTTCCTCAGAATTTTGCAAACTCCCCAGCATCTTTAATGCCTCAGATATTTGGACAGGCTCTTTACAACCAATCAAAGTTTTCTGGTCTACAAATGTCACATGAAGCAGACCCTTCACAATTCGGTAATCACCCTCAGCAGGTTCCACCACACCTTGCTGACACAGTTGGTGCTGCCATTGCTGCTGACCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGTGctcagcaacacaacaacagtaataataatagtaacaataatggCAACACGACAGCCAGCAACAGCAATGGCAATGGCAACATCACAAgtagcaacaacaacagcaataacGCAAGGCAATAA 1845 0.4509 MFRGGGLSMNSDPIGSFYLHKPIVLNSFPEDTNHPKWKLSPHNNMDATVSTEGSSSPTIPFQVNLSRSSNNHASSPPSHNNRTEMDFFSDKNIKDDNVAASASSSLPDNDHHSTTPPTLEFKVNTGLNLLTTNTSSDQSMVDDEISPNSEDKRAKHELAVLQAELERMKRENQKLRDTLDQVNTNYNALQMHLVNLTQEQKAEEVEEQEVFGGKLEEKKHGDNGGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPGNNNVEVASKELGTSKNNGNVNDEGVVYDQEKKKYCRGIEREDSPLGHAFAGDNKVPRFSPPKNNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSPDSLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRHPSQLQIPLQGLPQNFANSPASLMPQIFGQALYNQSKFSGLQMSHEADPSQFGNHPQQVPPHLADTVGAAIAADPNFTAALAAAITSIIGGAQQHNNSNNNSNNNGNTTASNSNGNGNITSSNNNSNNARQ 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2269 614 Coils Coil 151 199 - -
Ssu3g2269 614 MobiDBLite consensus disorder prediction 35 85 - -
Ssu3g2269 614 MobiDBLite consensus disorder prediction 43 83 - -
Ssu3g2269 614 Gene3D WRKY domain 335 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g2269 614 PANTHER OS05G0567200 PROTEIN 56 599 - -
Ssu3g2269 614 SUPERFAMILY WRKY DNA-binding domain 343 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g2269 614 SMART WRKY_cls 350 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g2269 614 MobiDBLite consensus disorder prediction 524 544 - -
Ssu3g2269 614 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 56 599 IPR044810 GO:0003700
Ssu3g2269 614 MobiDBLite consensus disorder prediction 239 285 - -
Ssu3g2269 614 Pfam WRKY DNA -binding domain 352 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g2269 614 ProSiteProfiles WRKY domain profile. 345 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g2269 614 MobiDBLite consensus disorder prediction 524 540 - -
Ssu3g2269 614 MobiDBLite consensus disorder prediction 241 285 - -
Ssu3g2269 614 MobiDBLite consensus disorder prediction 578 614 - -
Ssu3g2269 614 MobiDBLite consensus disorder prediction 132 152 - -
Ssu3g2269 614 Coils Coil 605 614 - -
Ssu3g2269 614 MobiDBLite consensus disorder prediction 100 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2269 Ssu-Chr3 72792403 72795435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2269 38 586 WRKY Transcription Factor Family AT1G62300 48.611 2.29e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g2269 WRKY 4.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2269 - - gmx:100797998 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2269 3 72792403 72795435 Ssu3g2269 3 72792403 72795435 ECH
Ssu3g2269 3 72792403 72795435 Ssu1g0907 1 20114792 20117100 ECH
Ssu8g0770 8 12576386 12577550 Ssu3g2269 3 72792403 72795435 PCT