Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2268 ATGGAGTGGCAGAGAGGCCACACCATAGGCCACGGCTCATCAGCCACCGTCTCCACCGCGACGTGCCGCAGCGGCATCTTCGCCGTGAAGTCATCGGAGCTGCCACTATCGGAGCCTTTAAAAAGGGAGCAAAAAATTTTATCCTCTCTAAGTAGTCCTTACGTGGTTACATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTCGGCACGCTTGCTCAGGCGACTCGCCGGCACGGTGGCCAGCTCGAGGAACCGGCGATGGCACGATACACAAGGCAAATTGTGCAGGGGCTAGAGTACTTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAATATCTTAATTGGTGAAGATGGGGCCAAAATTGGAGACTTTGGATGTGCCAAGAGTGCGGCGGACGAGGCGGCGCCGGTCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGTCAGTGACATTTGGTCACTTGGGTGCACTGTGATTGAAATGGCCACTGGTGGTGCACCGTGGCCTAATGTGGCAGACCCTTTTTCAGTGCTTTATCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTATCCGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGACGGCTAGTGAAGTCTTGAAGCATCCATTTATTGGGAAATTACGCTTCAATAGCAATAAGGAAGTTTTGGGGTCTAATTCAGGTTCCCCAACTAGTGTTCTTGAGCAAGGATTTTGGAGTTGTGTGGAAGAGTCAGAAAGTGTTGGCAATTTGGTTCACACAAGTGGTTTTGAAATTGCGGCTGCTGGGAGGGTCAGAAAGTTGGCTCTGTGTTCAGGGGTGCCCTGTTGGGCACGAcatcatgatgatgatgagaattGGATCACAACCAGAGGGAATGGGCGAGGGGCTGAGGTTGAAGGTTTTGGCAATTGTGGGGCAGGGACAGCTTCTGCCAGTCATGGGGTGTCTCAGCAGGAGTTGGTGAAAAGCAATTTCAGTGGTAGAATTAGTGGACATGCTTGTCAGGATCACAATTGTAGAGTGCTAGTGTTGTAG 1158 0.5052 MEWQRGHTIGHGSSATVSTATCRSGIFAVKSSELPLSEPLKREQKILSSLSSPYVVTYKGCDITMENNKLLFNLFMEYMPFGTLAQATRRHGGQLEEPAMARYTRQIVQGLEYLHSKGLVHCDIKGANILIGEDGAKIGDFGCAKSAADEAAPVGGTPMFMAPEVARGEEQGCVSDIWSLGCTVIEMATGGAPWPNVADPFSVLYHIAYSSEVPEIPCFLSEEAKDFLGKCLRRNPQERWTASEVLKHPFIGKLRFNSNKEVLGSNSGSPTSVLEQGFWSCVEESESVGNLVHTSGFEIAAAGRVRKLALCSGVPCWARHHDDDENWITTRGNGRGAEVEGFGNCGAGTASASHGVSQQELVKSNFSGRISGHACQDHNCRVLVL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2268 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Ssu3g2268 385 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2268 385 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Ssu3g2268 385 Gene3D Transferase(Phosphotransferase) domain 1 1 254 - -
Ssu3g2268 385 PANTHER MAP KINASE KINASE KINASE 1 349 - -
Ssu3g2268 385 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2268 385 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 349 - -
Ssu3g2268 385 CDD STKc_MAPKKK 2 251 - -
Ssu3g2268 385 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Ssu3g2268 385 Pfam Protein kinase domain 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2268 Ssu-Chr3 72779539 72780696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2268 1 333 MAP Kinase Kinase Kinase AT1G05100 52.011 8.65e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu3g2268 Pkinase 1.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2268 K20716 - gmx:100819665 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2268 3 72779539 72780696 Ssu3g2268 3 72779539 72780696 ECH
Ssu8g0772 8 12607685 12608623 Ssu3g2268 3 72779539 72780696 PCT