LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g2261	ATGGGGGTCATGAAGGGAGCCATTGGAGATGCAATTTTGACCTCAATATGGATTTTCATTATCTTAACTTTGAGGATTGTCTCTACTGAGGTGGCTCTTTTCCTTGGCCTCCAACCCTTCTCACTTGCAGGCCTCTTCATCACCACCATCCTGAACACCCTCTATGTCCTCATCATAAGCTTCATTGGAAGGGTCTTAGGTGGTGCCAGCTTCAACCCCTCAACCACTGTTTCCTTCTACACTGCAGGGCTCAGGCCTGACTCATCCCTTGCATCCATGGCTGTCAAGTTCCCTTTTCAGGCAGCTGGTGGGGCTGTTGGTGCCAAGACACTTCTTCTAGTGATGCCAGCTAAGTACAAGGACATGCTGAAGGGGCCTTTCTTGAAGGTGGACTTGCACACAGGTGCTATAGCTGAGGGGGTGTTGACTTTCACTCATAACTTGTTTATCCTCTTTATCATGCTCAGGGGTCCTAAGAACCCTTTTCTGAAGGTGTACTTGCTTTCTGTGGCTACTGTGGCTACTGTGGCTTTGGTTATTCCTGGTTCTGGGTTCACTGGCCCTTCCATGAACCCTGCCAATGCCTTTGGATGGGCCTTTATGAACAACAAGCACAACACTTGGGAGCAGTTTTACGTCTACTGGATATGTCCTTTCATTGGGGCATCCTCAGCTGCTTTGATCTACCGGTCTCTATTTATGTCACCAACCAAGCAGAAGAAAGCTTGA	729	0.4842	MGVMKGAIGDAILTSIWIFIILTLRIVSTEVALFLGLQPFSLAGLFITTILNTLYVLIISFIGRVLGGASFNPSTTVSFYTAGLRPDSSLASMAVKFPFQAAGGAVGAKTLLLVMPAKYKDMLKGPFLKVDLHTGAIAEGVLTFTHNLFILFIMLRGPKNPFLKVYLLSVATVATVALVIPGSGFTGPSMNPANAFGWAFMNNKHNTWEQFYVYWICPFIGASSAALIYRSLFMSPTKQKKA	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g2261	242	Gene3D	Glycerol uptake facilitator protein.	2	241	IPR023271	-
	Ssu3g2261	242	PRINTS	Major intrinsic protein family signature	212	232	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ssu3g2261	242	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ssu3g2261	242	PRINTS	Major intrinsic protein family signature	172	194	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ssu3g2261	242	PRINTS	Major intrinsic protein family signature	5	24	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ssu3g2261	242	SUPERFAMILY	Aquaporin-like	4	237	IPR023271	-
	Ssu3g2261	242	Pfam	Major intrinsic protein	10	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ssu3g2261	242	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	1	242	-	-
	Ssu3g2261	242	PANTHER	AQUAPORIN SIP1-1	1	242	IPR044222	GO:0015250

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g2261	Ssu-Chr3	72671394	72672122	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g2261	1	233	Major Intrinsic Protein MIP	AT3G04090	46.352	6.73e-60	187

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g2261	K09875		-	gmx:100797126	393.66