Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2246 ATGTTTATGGGCAGAACATGGTTCCTCTTGGCTTTCTGCTTGTGGATTCCCTTGGAAGTGGTGGGGAGGAAAGAGCCTTCTTCACCTACCACTGTGAATTCCACTGTTTCTTCGAGACCGAAGGTTGTGAAATTTGGAGCCCTCTTTACCATGGATTCTGTCATTGGAAGATCGGCTTTACCTGCAATTATGGCTGCCGTTCATGATGTTAACTTTAGCACGAGCATTCTCCCTGGCGTTGATTTGCAAGTCATTTTACATGATACAAATTGCAGTGCCTTTCTTGGAACAATGGAAGCCCTGCAGTTGATGGAGAATGatgtggttgctgttgttggtCCACTGTCATCTGGAATAGCTCATGTCATCTCTCATGTTGTTAATGAACTGCATGTACCTCTTCTATCGTTTGGGGCAACTGACCCCACTCTATCTGCTCTACAATACCCTTATTTTATCCGCACTACCCAGAACGACTATTTTCAGATGTTTGCAGTTGCAGACTTTGTTGATTATTACAGATGGAGGGAGATAATTGCCATTTATGTAGATGATGACAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGGGCCACAGAAGGTGATATCAGTGACTTGTTAAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCTATTTTCTCTATTGCCAAGAGGCTAAGAATGATGACCAgtggctatgtttggattgcaaCAGATTGGCTTCCTTCGGTGCTGGATTCCTTTGATCCACCTGACACTGACACAATGGATCTCTTACAAGGGGTTGTGGCTTTTCGACATCACATTCCTGATACTGATCTCAAGAAGAGTTTTCTCTCCAGGTTGAAAAGCCAAAGAGACAAGGAGACTGTAAGCTTCAACTCTTATGCAATTTATGCATATGATTCTGTTTGGTTAGCAGCTCGTGCCCTTGATGCTTATCTCAATGAAGGTGGAAATATATCCTTCTCCAGTGACCCTAAGTTGCATGACACAAATGGAAGCATGCTGCAGTTAGCATCACTTCGTACTTTTGATGGTGGCCCACAGTTTCTCCAGACAATTTTGGGAATGAACTTCACTGGTCTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATTTAGTTCATCCAGCGTATGATATTCTGAATATTGGTGGTAGTGGATCTCGTAGAGTTGGTTATTGGTCTAATCACTCTGGTCTGTCAGTTGTAGCTCCTGAAatattatatgagaaaaaatcATCCAACACTTCTTCGATGAGCAATCAACAACTGTACAGTGTGATATGGCCTGGAGAGGCTACAGCTACACCAAGGGGATGGGTGTTTCCCAACAATGGACAGCCACTGAGGATAGCAGTGCCTAACCGAGTGAGCTACAAAGACTTTGTTGCTAAGGACAAGGACCCCCCAGGGGTACAAGGCTATTGCATTGATGTCTTTGAAGCAGCCTTAAACTTGTTGTCTTATCCTGTCCCACGACAATATATGTTATATGGAAATGGTGAAAGGAATCCTAGCTACAATGAGCTTGTGGAACACGTCGCACAAAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCGTCAGggcttgttgttgttgttcctgTCGTGGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTGTGCCATTCACTACTGAAATGTGGTTTGTCACTggtgctttctttcttttcgtTGGAACTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAGTTCCGTGGCTCACCCAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGGGAGAAAACCGTGAGTGGATTTGGGAGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTAATCATAAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTCAACCGATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGATGACCTTAATATAGCTGAATCTAGGTTAGTTACGTTGAAAAACATGGAGGAATATATTGATGCCCTTCAGCGTGGCCCTAAAGGTGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTATGTTGAGGTCTTGATGTCCAGCACTGACTGTAAGTTCAGACCTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACTGCCATTCTCCAACTCTCTGAGAATGGGGACCTGCAAAAGATTCACGACAAATGGCTTAGTAAACAGGAGTGTGCAACCAATGATGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTGCCATTGCCCTGATTGTTTTCTTTGCTAGGGTGTGCTGTCAATATAACAAATTCAGCCCTGAGCCTGAGAAGACTGATGAGGAAATTCAACCAGTCAGGGCTAGACGTCCAAGCAGAACTCCTAGCATCAAGAACTTGATGGTATTTGTAGATAAAAGGGAAGCAGACATCAAAGAGATACTCaggcaaaacaaaaaaaggagacGCAACCAGAGCTTGGATGAACATTCTGTTAATCAGCCACCTAGTTAA 2808 0.4184 MFMGRTWFLLAFCLWIPLEVVGRKEPSSPTTVNSTVSSRPKVVKFGALFTMDSVIGRSALPAIMAAVHDVNFSTSILPGVDLQVILHDTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHVISHVVNELHVPLLSFGATDPTLSALQYPYFIRTTQNDYFQMFAVADFVDYYRWREIIAIYVDDDNGRNGISVLGDALSKKRAKISYKAAFPPGATEGDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKRLRMMTSGYVWIATDWLPSVLDSFDPPDTDTMDLLQGVVAFRHHIPDTDLKKSFLSRLKSQRDKETVSFNSYAIYAYDSVWLAARALDAYLNEGGNISFSSDPKLHDTNGSMLQLASLRTFDGGPQFLQTILGMNFTGLSGQIEFDMDKNLVHPAYDILNIGGSGSRRVGYWSNHSGLSVVAPEILYEKKSSNTSSMSNQQLYSVIWPGEATATPRGWVFPNNGQPLRIAVPNRVSYKDFVAKDKDPPGVQGYCIDVFEAALNLLSYPVPRQYMLYGNGERNPSYNELVEHVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPVVEQKSSPWSFLVPFTTEMWFVTGAFFLFVGTVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHREKTVSGFGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKYLIDDLNIAESRLVTLKNMEEYIDALQRGPKGGGVVAVVDELPYVEVLMSSTDCKFRPVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSKQECATNDVDSNKLALTSFWGLFLICGIACAIALIVFFARVCCQYNKFSPEPEKTDEEIQPVRARRPSRTPSIKNLMVFVDKREADIKEILRQNKKRRRNQSLDEHSVNQPPS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2246 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Ssu3g2246 935 Pfam Bacterial extracellular solute-binding proteins, family 3 493 822 IPR001638 -
Ssu3g2246 935 SUPERFAMILY Periplasmic binding protein-like II 456 822 - -
Ssu3g2246 935 Gene3D - 713 825 - -
Ssu3g2246 935 PIRSF IGluLR_plant 3 934 IPR017103 -
Ssu3g2246 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Ssu3g2246 935 PANTHER GLUTAMATE RECEPTOR 3.4 32 916 - -
Ssu3g2246 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Ssu3g2246 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Ssu3g2246 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Ssu3g2246 935 Gene3D - 62 406 - -
Ssu3g2246 935 MobiDBLite consensus disorder prediction 916 935 - -
Ssu3g2246 935 CDD PBP1_GABAb_receptor_plant 44 435 IPR044440 -
Ssu3g2246 935 Gene3D - 475 589 - -
Ssu3g2246 935 CDD GluR_Plant 478 821 - -
Ssu3g2246 935 Gene3D - 158 431 - -
Ssu3g2246 935 Gene3D - 590 711 - -
Ssu3g2246 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 916 - -
Ssu3g2246 935 Pfam Ligand-gated ion channel 823 852 IPR001320 GO:0015276|GO:0016020
Ssu3g2246 935 Pfam Receptor family ligand binding region 60 415 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2246 Ssu-Chr3 72359188 72364144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2246 39 788 Ion Channels AT1G05200 68.000 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2246 K05387 - gmx:100802782 1664.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2246 3 72359188 72364144 Ssu3g2246 3 72359188 72364144 ECH
Ssu8g0789 8 12992632 12997370 Ssu3g2246 3 72359188 72364144 PCT
Ssu3g2246 3 72359188 72364144 Ssu8g0788 8 12982952 12987685 PCT