Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2242 ATGTTCCAGCCGAACCTGATGGACCCGTTGGAGATGGGTCAGAACACTTCGGAGAGTGAGGTTCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGAGTGGCAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCGCACCCGGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAGCACGAGCGGCATGAGAATACACAGCTTAGAACCGAAAATGAGAAGCTTCGAGGGGATAACATGAGGTACAGGGAGGCTCTTAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACCGCTATTGGAGAAATGTCATTCGATGAACATCACTTGAGGCTTGAGAATGCTCGGCTAAGAGAAGAGatCGATCGGATTTCAGCAATTGCAGCCAAATATGTAGGCAAGCCTGTGGTGAACTACTCAAATATTTCACCTTCTCTCCCTCCTCGTCCACTAGAACTTGGGGTTGGTGCCGGTTTTGGAGGCCAGCCAGGGCTTGGTGTGGACATGTATGGAGCTGGGGATCTTCTGAGGTCAATTAGTGGCCCCACTGAAGCTGATAAACCAATAATAATAGAGCTAGCTGTTGCAGCTATGGAAGAGCTCATTGGGATGGCACAAATGGGTGAGCCTCTTTGGTTAACTACCCTTGATGGCACATCCACTATGCTCAATGAGGATGAATACATCAGGTCCTTCCCTCGAGGAATTGGCCCTAAACCCACTGGCTTCAAATGTGAAGCTTCACGAGAAACTGCTGTTGTCATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTGAATCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACACTAGAAGTGCTATCAACAGGGGTGGCCGGCAACTACAATGGTGCCTTACAAGTgATGACAGCAGAACTACAACTACCTACACCTCTTGTGCCAACTCGAGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGCCGACGGGACTTGGGCAGTTGTGGATGTGTCTTTGGATAATTTGCGCCCAAGTCCTTCAGCCAGATGTAGAAGAAGGCCTTCTGGTTGCCTAATTCAAGAACTGCCAAATGGCTATTCAAAGGTCATATGGGTTGAGCACGTGGAAGTGGATGACAGAGGTGTTCACAATCTTTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGCGCAAAACGTTGGGTTGCAACCTTAGATCGACAGTGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACTGTAGATGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGTATGATGAAGCTGGCTGAAAGAATGGTTATAAGCTTTTGTGCGGGAGTGAGTGCTTCCACTGCTCACACATGGACTACACTCTCTGGGACAGGAGCTGATGATGTAAGGGTGATGACCCGAAAGAGTGTAGATGACCCAGGAAGACCTCCTGGCATAGTTCTTAGTGCTGCCACCTCTTTTTGGCTTCCGGTTCCACCTAAACGAGTTTTTGACTTCCTCCGTGACGAGAATTCTAGGAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGTGTGTCTCTACTTCGAGTAAATAGTGCCAATTCAAGCCAGAGCAACATGTTGATCCTACAAGAGAGTTGCACCGATTCAACCGGCTCTTTTGTCATTTATGCTCCGGTAGATATTGTTGCCATGAATGTAGTTCTAAATGGAGGAGACCCAGACTATGTAGCCCTTCTTCCTTCAGTTCCAACCGCTAAGCTTTCTCTTGGATCTGTTGCCACTGTTAACAATCTCATTGCATGCACTGTGGAGAGAATCAAGGCCTCCTTATCCGTTTATTACAAGGAGGATGAAAGGGATGCATTGCGTTGTGGAAAATCAGAAGGTGGTGAGGAACTTCGGCTTATATTACAAAGATGGGGAGAAGTCAAGAGCGCACCTTGCTTGATCCCTTCTCAGCACCCCAAAAGAGCTCTGAGAGGATTAAGAATGAGAGACTATCTACGCAATGTATTTTTTGCTTACCTTTTTAACATACCAATCGCATTTATGGTTGTTGTACGTCTAGTCATGGCCAACGACTCAACACTTGCCCTTCTTATAACTCTCGCTGGAGTCGGGTACCATGGCTTCAGCTTGTTGCTTTTGTCTTTTGCATATGTACCATGTAGAAATCGCTGCCTTCTATTTTCTCAAGTTGGTAGATTGGTTCTTTGGAATACAATGTCATGGCATAAAGAAAAAGCTTTGGATGAGGATATCCTGTCTAGTTTTGATGAAGAGGGTTTGTCCACTTTGGAGTTGCTTGCCTCGAGAGCAATGGACTTGTTCTTTTGTTGGGATCTCTTCGGTAGAGGTGGCCCAATAATAGATCTAGGATCGGCTCTGATATCATCTTACAATTTGCGTTTTAGGCCTAATTTAACtttacaaaaccggcttCTCAATGCTCTAGAAGGAAGAACAGTTAAGAAGTTGCTGTGA 2703 0.4595 MFQPNLMDPLEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRGDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPGLGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSVPTAKLSLGSVATVNNLIACTVERIKASLSVYYKEDERDALRCGKSEGGEELRLILQRWGEVKSAPCLIPSQHPKRALRGLRMRDYLRNVFFAYLFNIPIAFMVVVRLVMANDSTLALLITLAGVGYHGFSLLLLSFAYVPCRNRCLLFSQVGRLVLWNTMSWHKEKALDEDILSSFDEEGLSTLELLASRAMDLFFCWDLFGRGGPIIDLGSALISSYNLRFRPNLTLQNRLLNALEGRTVKKLL 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2242 900 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 654 685 - -
Ssu3g2242 900 SMART START_1 245 465 IPR002913 GO:0008289
Ssu3g2242 900 SMART HOX_1 53 116 IPR001356 GO:0003677
Ssu3g2242 900 Coils Coil 118 138 - -
Ssu3g2242 900 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 10 654 - -
Ssu3g2242 900 MobiDBLite consensus disorder prediction 20 53 - -
Ssu3g2242 900 SUPERFAMILY Homeodomain-like 44 112 IPR009057 -
Ssu3g2242 900 CDD START_ArGLABRA2_like 240 464 - -
Ssu3g2242 900 Gene3D - 293 462 IPR023393 -
Ssu3g2242 900 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Ssu3g2242 900 Gene3D - 41 128 - -
Ssu3g2242 900 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Ssu3g2242 900 SUPERFAMILY Bet v1-like 236 467 - -
Ssu3g2242 900 CDD homeodomain 55 113 IPR001356 GO:0003677
Ssu3g2242 900 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Ssu3g2242 900 SUPERFAMILY Bet v1-like 484 654 - -
Ssu3g2242 900 Pfam START domain 246 465 IPR002913 GO:0008289
Ssu3g2242 900 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 654 685 IPR042160 -
Ssu3g2242 900 MobiDBLite consensus disorder prediction 1 63 - -
Ssu3g2242 900 ProSiteProfiles START domain profile. 236 468 IPR002913 GO:0008289
Ssu3g2242 900 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 654 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2242 Ssu-Chr3 72324719 72337908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2242 24 684 Homeobox Transcription Factor Family AT1G05230 77.937 0.0 1106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu3g2242 START 2.1e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2242 K09338 - gmx:100782260 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2242 3 72324719 72337908 Ssu3g2242 3 72324719 72337908 ECH
Ssu8g0791 8 13014679 13020178 Ssu3g2242 3 72324719 72337908 PCT